Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0850 ATGGAAACTCTCTGTCCCTCAGCCACCACCTTCAACATCACCAGAAAATTCTCCCACAAAATTCAGTCTCAAGCTTCCTCTCTCTTCCACACAACCCTTGCATTTCCCAGTCCATTCAAAAACAACTACAACAACAATCTCTTGAATCTATCTTATTCTTCTTCTTGTTCCATTTCTTGTGTTTCTTCATCTTCATCAACAGCAACAAACGCAGTATCAGCATCTACAACTTCCACTTCCCTTGCTTTCTCTGCTTCAGCTGGCGAGCGGCAGCGCCACTGGATGGTGCAAATGGAGGCTCCTCCACAAGTGCTTCGTTCCAAAGCTGAGATTATTGATTACTATGTCAGAACCCTTGAAACGGTTCTGGGCAGCGAGAAGGATGCTCAGATGTGTATATATGATGCTTCTTGGGATGCCCCTTTTGGTTTCTGTTGCGATATCGATGCAGAAACTTCTCGCGAGCTTTCTGGTTTACAGGGGGTTTTATCTGTTAAACCCGACCCCAATTTTAACTCTGTGAAAAAGGACTATACCTTTTCGAATATTCAACTGGGTAGTGTGTCAAACTCAGACATTGGAAGTCCTCAATTATTTCCTGCGGGGAATTCCAAGTACTGGCTTGTTCAAATGGACAGACCAACAGTTGGAGTTGTTACCAAGGCGCAGATGGTTGATTTTTATGCTCAAATACTAACCAAGGTTTTGGGAAATGAGAAGGATGCCCAAATGTGTATATATCACATTTCCTGGCAATCTGATTTTGGGTTTTGTTGTGAACTTGATGAGGAGTGTGCAAGAGAACTGGCAGGTGTGCCTGGTGTTTTATCAGTTCGCCCAGATGAGAACTTTGAGTCCAATAATAAGGATTATGGAGGTGGTAGTTTACAGAATTCTACAGATTCACTGGATTCTATGGAAGCAAATCAACCGACAAATATAAAAACTAAGAAACTTTTTGTAACTGGGCTATCTTTCTATACATCTGAGAAAACCTTACGCGGAGCATTTGAAGGATTCGGTGAACTTGTTGAAGTTAAGATTATAATGGATAAAATTTCTAAAAGGTCCAAAGGTTATGCATTTATAGAGTATACAACTGAAGAGGCTGCTAGTGCAGCTCTCAAAGAAATGAATGGCAAGATTATTAATGGGTGGATGATAGTTGTTGATGTTGCCAAGCCAACCCCACAAAAGTACAGCAGGAGCCGTCCAAGACCAGCAGTCTGA 1230 0.4187 METLCPSATTFNITRKFSHKIQSQASSLFHTTLAFPSPFKNNYNNNLLNLSYSSSCSISCVSSSSSTATNAVSASTTSTSLAFSASAGERQRHWMVQMEAPPQVLRSKAEIIDYYVRTLETVLGSEKDAQMCIYDASWDAPFGFCCDIDAETSRELSGLQGVLSVKPDPNFNSVKKDYTFSNIQLGSVSNSDIGSPQLFPAGNSKYWLVQMDRPTVGVVTKAQMVDFYAQILTKVLGNEKDAQMCIYHISWQSDFGFCCELDEECARELAGVPGVLSVRPDENFESNNKDYGGGSLQNSTDSLDSMEANQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPTPQKYSRSRPRPAV* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0850 409 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 73 172 IPR037045 -
Vvi13g0850 409 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 200 286 IPR037045 -
Vvi13g0850 409 SMART rrm1_1 318 391 IPR000504 GO:0003723
Vvi13g0850 409 FunFam Organelle RRM domain-containing protein 1, chloroplastic 195 284 - -
Vvi13g0850 409 SUPERFAMILY RNA-binding domain, RBD 309 405 IPR035979 GO:0003676
Vvi13g0850 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 395 IPR000504 GO:0003723
Vvi13g0850 409 Gene3D - 288 408 IPR012677 -
Vvi13g0850 409 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 197 386 IPR039206 GO:0016554
Vvi13g0850 409 FunFam Organelle RRM domain-containing protein 1, chloroplastic 77 172 - -
Vvi13g0850 409 FunFam Organelle RRM domain-containing protein 1, chloroplastic 285 409 - -
Vvi13g0850 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 385 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0850 Vvi-Chr13 10138889 10145657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0850 313 404 C2H2 Transcription Factor Family AT2G19380 32.609 4.71e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0850 - - vvi:100265361 746.117