Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0849 ATGTATAGCAATTTTAAGGAGCAAGCTATAGAGTATGTTAAGCAGGCAGTTCAGGAAGATAATGCTGGCAATTATAGTAAGGCGTTTCCGCTTTATATGAATGCCTTAGAGTACTTCAAGACGCATTTGAAATACGAGAAGAATCCTAAGATTAAGGAAGCTATTACTCAGAAATTCACTGAATATTTGAGGCGGGCAGAGGAGATCAGGGCTGTTCTTGATGATGGGGGGACTGGTCCAGCCTCAAACGGGGGGAATGCATCAGTGGCTGCAAAACCGAAAACGAAGCCCAAGAATGGAGATGGGGGGGATGGGGATGATGCGGAGCAAGCCAAGCTTAGGGCTGGGCTTAATTCTGCTATAATCACTGAGAAGCCAAATGTGCAGTGGAGTGATGTGGCTGGGCTTGAGAGCGCCAAGCAGGCACTGCAAGAGGCTGTCATATTACCTGTTAAGTTCCCACAGTTCTTTACTGGGAAGAGACGGCCCTGGAGGGCTTTTCTATTGTATGGTCCACCTGGAACAGGAAAGTCATACTTAGCCAAGGCTGTTGCAACAGAAGCAGACTCAACATTCTTCAGTGTGTCTTCATCTGATCTAGTTTCAAAATGGATGGGTGAAAGTGAAAAGCTAGTCTCAAATCTGTTTCAAATGGCTCGTGAAAGTGCTCCTTCCATCATTTTCATTGATGAAATTGATTCCTTATGTGGCCAACGAGGTGAAGGCAATGAGAGCGAAGCCTCCCGACGTATTAAAACAGAGCTTCTTGTTCAGATGCAGGGTGTAGGGCACAATGATCAGAAAGTTCTTGTTCTTGCAGCCACAAACACTCCCTATTCCCTGGATCAGGCCATCCGACGGCGATTTGACAAGCGAATCTACATTCCTCTTCCAGATTTGAAAGCAAGGCAGCACATGTTTAAGGTTCATCTGGGAGACACCCCTCATAACTTGACTGAACATGATTTTGAACACCTGGCTTATAGAACTGATGGATTCTCTGGTTCAGATATTTCTGTTTGTGTCAATGATGTACTATTTGAACCTGTTCGGAAAACTAAGGATGCTTCTTACTTTGTAAAAACTTCCAATGGCATCTGGGTCCCTTGTGGCCCTACTCAACGCGGAGCTGTTCAGGTTACTTTGCAGGAACTTGAAGCACAAGGCCTTGCTTCAAAGATCCTCCCTCCGCCCATCTCAAGGACTGATTTTGAAAAAGTACTAGCAAGACAGAGACCAACAGTGAGCAAAGCAGATCTGGAGGTGCACAATAGATTCACAAAGGAGTTCGGGGAGGAGGGATGA 1305 0.4559 MYSNFKEQAIEYVKQAVQEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGTGPASNGGNASVAAKPKTKPKNGDGGDGDDAEQAKLRAGLNSAIITEKPNVQWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYSLDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTEHDFEHLAYRTDGFSGSDISVCVNDVLFEPVRKTKDASYFVKTSNGIWVPCGPTQRGAVQVTLQELEAQGLASKILPPPISRTDFEKVLARQRPTVSKADLEVHNRFTKEFGEEG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0849 434 CDD RecA-like_VPS4 125 295 - -
Vvi13g0849 434 PANTHER AAA DOMAIN-CONTAINING 16 432 - -
Vvi13g0849 434 Gene3D - 126 422 IPR027417 -
Vvi13g0849 434 CDD MIT_VPS4 4 78 IPR045253 -
Vvi13g0849 434 Gene3D - 6 75 - -
Vvi13g0849 434 SMART AAA_5 163 299 IPR003593 GO:0016887
Vvi13g0849 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Vvi13g0849 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 430 IPR027417 -
Vvi13g0849 434 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vvi13g0849 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vvi13g0849 434 FunFam Vacuolar protein sorting-associated protein 4 126 306 - -
Vvi13g0849 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Vvi13g0849 434 SMART smart 2 79 IPR007330 -
Vvi13g0849 434 SUPERFAMILY MIT domain 2 86 IPR036181 -
Vvi13g0849 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Vvi13g0849 434 Gene3D - 299 414 - -
Vvi13g0849 434 FunFam vacuolar protein sorting-associated protein 4A 299 414 - -
Vvi13g0849 434 MobiDBLite consensus disorder prediction 74 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0849 Vvi-Chr13 10128836 10137614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0849 162 357 Calmodulin-binding Proteins AT3G56690 37.879 2.30e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0849 K12196 - vvi:100243069 843.573