Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0837 ATGAGCCCACCACCCTCCAATCGGAGACCCAGGTTGCGGAAGGTCGAAACGGCGACGTTTAGATCACCGGTGGCAACATCGGTTGAGGGGGATAATGGGTTAGCGAGAGTGGAGAAGAGATCGGAGGTTGCGGCTGAGGAGAGAGACTGGGTCGATGGGGACGTGGAGATTTTGAAGAAGCAGCTGCTGAAGCACCCTGTGGGGATGCCGGGTCGGTGGGAGGCGGTGGCTGAAGCGTTCCAGGGCCGGCACGGGGTGGAGAGCGTGATCCGGAAGGCGAAATCATTGGGGGAGAAGAAATTGAGCGATTCGGATTCGTTTAATCGGTTCTTGAAGGATCGAAAGCCCGTGGATAAGCGCGTTGAAGATGCAATGGCAATGGAAAACGGTGAAAAGAAGGAGGGATGGAGTAGTGGAGAAGACATTGCTTTGCTCAATGCTTTGAAAGCGTTTCCCAAGGATGTGCCGATGAGGTGGGAGAAGATTGCAGCTGCAGTTCCGGGAAGGTCAAAAGCGGCTTGTATGAAGAGATTTTCTGAATTAAAAAAGGATTTTCGGAACCCCAAGCTGCTGCTGAGGAGTAACTGTGTTGAAGAGGTGATAGTTTTGATTTACCGTATGAATATAAATGTTTGTTTCTTGCTGTTTCAGTTATTCATAATGATATGTTTAAGTACCCAAACTGAAATTTTAGTAGTCATTTCTCCAACTATATTATGCTATCTTAGTTCATTTTATTTTGAAATCAGGAAGATTCTTTATTGCTAG 768 0.474 MSPPPSNRRPRLRKVETATFRSPVATSVEGDNGLARVEKRSEVAAEERDWVDGDVEILKKQLLKHPVGMPGRWEAVAEAFQGRHGVESVIRKAKSLGEKKLSDSDSFNRFLKDRKPVDKRVEDAMAMENGEKKEGWSSGEDIALLNALKAFPKDVPMRWEKIAAAVPGRSKAACMKRFSELKKDFRNPKLLLRSNCVEEVIVLIYRMNINVCFLLFQLFIMICLSTQTEILVVISPTILCYLSSFYFEIRKILYC* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0837 255 SUPERFAMILY Homeodomain-like 132 183 IPR009057 -
Vvi13g0837 255 SMART sant 132 184 IPR001005 -
Vvi13g0837 255 SMART sant 46 99 IPR001005 -
Vvi13g0837 255 ProSiteProfiles Myb-like domain profile. 128 182 IPR001005 -
Vvi13g0837 255 FunFam Myb family transcription factor 130 190 - -
Vvi13g0837 255 Gene3D - 44 103 - -
Vvi13g0837 255 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 39 189 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi13g0837 255 CDD SANT 136 182 IPR001005 -
Vvi13g0837 255 Gene3D - 119 189 - -
Vvi13g0837 255 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0837 Vvi-Chr13 9992537 9993493 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi13g0837 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0837 - - vvi:100250000 397.127