Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0833 ATGCCAAGCGGTGCATCCACAGTCTGCGGTGCCGTCGGAACCCATGATCACAAATCCAAGAATGGATCTCACCTCGTCGGAATCGAATTTCCTGAGTGCCTCAGCTTCAATGCAGTCACAACTGCAGCTACTACTGGCCAAATCCGAAGAAATCGAACCCCTCACCAGATGAAGAGTTCGATCATCATGATGACGCCTTTTGGGCCACTAACCCGTGTTTATGTTGCCATTGACCACAAGTTTGGTTTGAGCAGAGGTTTTGGGTATGTCAATTTTGTCAACGGGGAAGATGCTGGGAGAGCTATTAATAAGCTCAGTGGATTTGGTTATGACAGTCTCATCCTGCAAGTGGAGTGGTCCCCACCAAGGTCATTAGTTGACTGGCTTCCCAGTGGAAATCAAGGCCCCATAGTGCCAGAACCTGATCAAGTGGCTAGTCAAGCATCCGACCTCACTGCATGGAAAAGAGTGATCAAGGAGAGGGGATCACAGCTGAAGAGGAGCAGCTTGCAAGGTGGGGACACCCATATACGGTACGCAGGGAGATTGAGGAGAAAAAGAGAGATCTTGAAAAAAAGCGCGGAGAGAAGAGCAGAAAGAGAGGGAGATTGGAGGCAAGACTGCCCAGATTTGTTCTCTGCTTCGGAGTTAAAAATTAAAAATCATGGGAAAAGGGACACTCTGCTTTTTCTGCATTCGGATAAGCATAATGTGGTGCTCGAAATCATGGACTTCTCTAAGCCTTCTGCCATTGGTAGCTGTCATGGGTTAGGATCTAGTGGCGGGCAAAATAGCAGAAAGAAAGAAATTGATGCAGCTTCTGTTGATAAAATCCCAAGAAATCAAAGTGGAAGGGATCGGATTGAAGGAATTTCAACAACCGCTGACTTCTTGAAGCCCAGCTTGACTGTGCCCAGTCCGTACAAGAAGTCTGACTTATCTTATCTGATGCGAATGCAGCTGTGGCCATCTATCCAGCAGTTTGTTTGCAGCAAGGACTCGAATGAACTATGGTTCTGGTGCCAAAGTATACTAGAAGTTGCAGAGAAGTTATGTGGATCTTTGCTTGTTCATCATCCTGAAGCACTCCTGATGAATACGTCGTATCCAAAATTCGCCACCGCCATCTGGTTCTCCTTGATTGGATACTGTGATGAAAGGCTTGAGATTTGCATTGGTTCTGCATGCGGTACTAATCACCTTCACACTGGTTCTGATGGGGGAATCATTCACTGGGATTTTAAATCAACAAACATGTTGCTTCATGAGAATTATATGCCACTGAGAACTGAGCAAGAGGAGACTCGAGATTTGACAACTGCTATCCAGGAGCAAGCATCTAAAGGCTTGGGTTTGAAATCAACTGAGCAGTCAGAGAATCCTATCCAAAACAAGCATCCTAGAAACTCCTCAATGACAGAAAGCGGTGCTGATAAGAATCCAGAATTAAATGAGAAGCTACAGGATGCTCTTGCTCAGGCTGTTGTTTGCTTACATATGGTTTTTGTCAGACTTGGATGGGATGAAGCTTGGGATATGACATCAAAAGTCATTGGTATATCTCATATGGAAACTGAGCTTTTGTGTTCTGGAGATCATGTCCCAGATTTAGGCATCATGGAAGGAGCTCTAAGAACTGAGGATATGATTCTTCAACCTTCAGTATTCCAGCTATCAGAAATGGCAGCCTGGAGAACAGAGAAGAAGCCCGTCGAGAAGAAGCTTTCAGGAGGAACAAGAGGATGGTGGAGCTGGGTGTCTTCTTCGCAGCCACTCTCGAAAGTCCCGAAATACAGGATCCATCAGAAAGTCTCTAGCTCACTGCCCATTTGCCTTCACACACGTACTAAGTTGCTGAATCCTTTTGACCGAGGGTCAATTTCTGATTATGGGCAATTTGATATACCTGAAGGATGA 1917 0.4554 MPSGASTVCGAVGTHDHKSKNGSHLVGIEFPECLSFNAVTTAATTGQIRRNRTPHQMKSSIIMMTPFGPLTRVYVAIDHKFGLSRGFGYVNFVNGEDAGRAINKLSGFGYDSLILQVEWSPPRSLVDWLPSGNQGPIVPEPDQVASQASDLTAWKRVIKERGSQLKRSSLQGGDTHIRYAGRLRRKREILKKSAERRAEREGDWRQDCPDLFSASELKIKNHGKRDTLLFLHSDKHNVVLEIMDFSKPSAIGSCHGLGSSGGQNSRKKEIDAASVDKIPRNQSGRDRIEGISTTADFLKPSLTVPSPYKKSDLSYLMRMQLWPSIQQFVCSKDSNELWFWCQSILEVAEKLCGSLLVHHPEALLMNTSYPKFATAIWFSLIGYCDERLEICIGSACGTNHLHTGSDGGIIHWDFKSTNMLLHENYMPLRTEQEETRDLTTAIQEQASKGLGLKSTEQSENPIQNKHPRNSSMTESGADKNPELNEKLQDALAQAVVCLHMVFVRLGWDEAWDMTSKVIGISHMETELLCSGDHVPDLGIMEGALRTEDMILQPSVFQLSEMAAWRTEKKPVEKKLSGGTRGWWSWVSSSQPLSKVPKYRIHQKVSSSLPICLHTRTKLLNPFDRGSISDYGQFDIPEG* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0833 638 Gene3D - 50 125 IPR012677 -
Vvi13g0833 638 MobiDBLite consensus disorder prediction 447 478 - -
Vvi13g0833 638 SUPERFAMILY Protein kinase-like (PK-like) 385 426 IPR011009 -
Vvi13g0833 638 MobiDBLite consensus disorder prediction 447 480 - -
Vvi13g0833 638 Gene3D Transferase(Phosphotransferase) domain 1 383 445 - -
Vvi13g0833 638 MobiDBLite consensus disorder prediction 1 21 - -
Vvi13g0833 638 CDD RRM_eIF3G_like 66 120 IPR034240 -
Vvi13g0833 638 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 64 136 - -
Vvi13g0833 638 SUPERFAMILY RNA-binding domain, RBD 64 133 IPR035979 GO:0003676
Vvi13g0833 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 110 IPR000504 GO:0003723
Vvi13g0833 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 122 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0833 Vvi-Chr13 9928134 9936755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0833 52 123 Eukaryotic Initiation Factors Gene Family AT3G11400 63.889 2.96e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0833 K03248 - vri:117908216 124.405