Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0827 ATGGGTAGTAGCAGCAACTCCACCCTATTTTCTTCAATTCTCTTCCTTTCCCCAGCTAATGATGCTGCCATAGACGATGTCTTGTCTCACCTCACCTTCCTCTTGATGCTCTTTATCATATCCGTCATTCTCAACTTCACCAAATTCAAATCCAAAACCAGTACCAATAGCAAGTCAATGATGCTTCCTCCAGGGCCAGCTCCATGGCCACTAGTCCGAAATCTACCTCATTTACTCAACAGGAAGCCTACTTTCCGTTGGATACATGGCTTTATGAAAGAAATGAACACTGAAATCGAGTGTATTCAGTTGGGTGATGTTCATGTCATCCCGGTGACTTCCCCAGAGATCAGCAGAGAATTTTTGAAGAAACATGACACAGTATTGGCATCCAGGCCCATTACAATGGTGACTGAGTATTCAAGTGGTGGCTTCTTGACCACAGCGGTGGTGCCATGGGGAGAGCAGTGGAAGAAGATGAGAAGGGTTCTAGCTTCTAAAGTGATTAATCCATCAACATTTAGGTGGCTGCATGACAAGAGGGTGGAAGAAGCCGACAATCTTGTCCGATACGTTTATAACCAGTGTAAGATCTCTACTAGCAATAACTGTCTTGGCTCGGTTATCAACGTCAGAAATACAGTCCGTCAATATAGCGGAAATGCCATCAGGAAGATGATCCTCAACACAAGATACTTTGGTGAAGGAAAGCAAGATGGAGGCCCTGGAGTTGAAGAGGAACAACATGTTGAGTCGCTCTTTACCGTACTTGCTCATCTATATGCGTTCTCTTTATCTGATTACTTCCCTTGGTTTAGAGTACTGGACTTAGATGGCCATGAGAAGACTGTAAGGGAGGCTATGAACACTATTAACAAGTATCATGATCCAATCGTGGACCAAAGAGTAGAACATTGGAGGAATGGCGAAAAGGAGGCTGAGGACCTGCTTGACGTTTTCATTTCAATTAAGGATTCAAATGGGGAGCCACTGCTGTCTGTGGCTGAGATCAAAGCCCAATGCACAGAGTTGATTCTTGCAGCAGTGGATAATCCATCAAATGCAATTGAGTGGGCAATGGCAGAAATGATCAATCAACCAAGGGTTTTGGGTAAAGCAGTGGAAGAAATAGATAGAGTGGTTGGAAAGGAGAGACTGGTCCAGGAATCCAACTTTCAGCAGCTAAACTATGTTAAGGCCTGCATAAAGGAAGCTTTCCGGCTTCACCCAATTGCACCATTTAATCTTCCCCATGTATCCAATGCCGATGCCATTGTTGCTAGCTACTTCATCCCCAAAGGCAGTCATGTCCTTCTCAGCCGTCTGGGGCTTGGCCGAAACCCTAGAATCTGGGAAGAACCACTAATATTCAATCCAGAGCGCCATCTGAATGCTAGTACAGCGCAAGGAGTGGATTTGAACGAGCAAGACCTTCGCCTCATTTCCTTCAGTACAGGAAGGCGTGGGTGCACAGGGATTGCATTCGGGTCTGCAATGACTGTGATGCTATTGGTAAGGCTCCTTCAAGGCTTCACTTGGAGTCCGCCACCGGGCCAAAAGGAGGTTGATCTCTCAGAGTCAAGAAATGATCTCTTTCTAGCAAATCCTCTGCATGCCCTAGCAAAACCACGTCTGCATTCATCATTATTGTAA 1653 0.4549 MGSSSNSTLFSSILFLSPANDAAIDDVLSHLTFLLMLFIISVILNFTKFKSKTSTNSKSMMLPPGPAPWPLVRNLPHLLNRKPTFRWIHGFMKEMNTEIECIQLGDVHVIPVTSPEISREFLKKHDTVLASRPITMVTEYSSGGFLTTAVVPWGEQWKKMRRVLASKVINPSTFRWLHDKRVEEADNLVRYVYNQCKISTSNNCLGSVINVRNTVRQYSGNAIRKMILNTRYFGEGKQDGGPGVEEEQHVESLFTVLAHLYAFSLSDYFPWFRVLDLDGHEKTVREAMNTINKYHDPIVDQRVEHWRNGEKEAEDLLDVFISIKDSNGEPLLSVAEIKAQCTELILAAVDNPSNAIEWAMAEMINQPRVLGKAVEEIDRVVGKERLVQESNFQQLNYVKACIKEAFRLHPIAPFNLPHVSNADAIVASYFIPKGSHVLLSRLGLGRNPRIWEEPLIFNPERHLNASTAQGVDLNEQDLRLISFSTGRRGCTGIAFGSAMTVMLLVRLLQGFTWSPPPGQKEVDLSESRNDLFLANPLHALAKPRLHSSLL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0827 550 PRINTS E-class P450 group I signature 117 138 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS E-class P450 group I signature 399 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS E-class P450 group I signature 490 513 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS E-class P450 group I signature 336 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS E-class P450 group I signature 356 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS E-class P450 group I signature 480 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS E-class P450 group I signature 440 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 SUPERFAMILY Cytochrome P450 63 544 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 Gene3D Cytochrome P450 55 548 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS P450 superfamily signature 400 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS P450 superfamily signature 347 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PRINTS P450 superfamily signature 481 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 Pfam Cytochrome P450 63 533 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0827 550 PANTHER CYTOCHROME P450 98A9 35 549 - -
Vvi13g0827 550 FunFam Cytochrome P450 9 55 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0827 Vvi-Chr13 9834087 9835851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0827 26 545 Cytochrome P450 AT5G05260 60.762 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0827 K12153 - vvi:100260154 1031.17