Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0802 ATGCTCCTTGACGAGTACCTTACACCTAGGATTTCAGACTTCGGACTAGCAAAGCTTCTGATGAGAGATCATACTCGGACCCTTACAACCATCAGAGGGACCAAAGGATACATTGCACCAGAATGGTTCAGGAGCAAGCCGATTACGGTGAAAGTGGATGTTTATAGTTATGGGGTTATGTTACTGGAGATCATCAGTTGCAGGAAGAGTGTACATTCACAGTCGGAAAATGAGGAGGAAGCAATACTTTCTGATTGGGCTTATGATTGCTATAGAGGGCACAGATTGGATAAGCTAGTGAAGAATGATGATGAGGCAAAAAAGGACATGGGGATGCTGGAGAGGGTAGTGATGGTTGCCATTTGGTGCATTCAAGAGGACCCTTCTTTGAGGCCCTCCATGGGAATGGTCATACTGATGCTTCAAGGAGTTGTTGAAGTTCCTGTGCCCCCTTGTCCTTTCCCCTTTATAGCTCAACCTTCTGAAACTACACATCCCTAA 501 0.4551 MLLDEYLTPRISDFGLAKLLMRDHTRTLTTIRGTKGYIAPEWFRSKPITVKVDVYSYGVMLLEIISCRKSVHSQSENEEEAILSDWAYDCYRGHRLDKLVKNDDEAKKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVPVPPCPFPFIAQPSETTHP* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0802 166 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 154 - -
Vvi13g0802 166 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0802 166 Gene3D Transferase(Phosphotransferase) domain 1 1 150 - -
Vvi13g0802 166 Pfam Protein kinase domain 2 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0802 166 SUPERFAMILY Protein kinase-like (PK-like) 2 162 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0802 Vvi-Chr13 9261141 9261641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0802 1 151 Receptor kinase-like Gene Family AT5G20050 38.554 1.81e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g0802 Pkinase 1.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0802 - - vvi:100253963 325.865