Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0801 ATGATTGCCTCTGTGTGGTTGTTATCTATAACACTAACAATCAGTAGATGCCCAGACAAGTCTACCTTGATCCTTGTTGGGTCAGTACTCCTTGGCAGCTCTGTGTTCTTTAATCTCTTTCTGTTGTTAGCAATCCCTGCGGCTGCTCTCTTCTTCTACAATAAGAAACTGATGAATATCCAGTCCGTTTCAAGCAAATTCCCGACCACCAGTGTGAGAACTTATTCATACAAAGAGCTTGAAGAGGCAAACGGTGGATTCAAGGAGATATTGGGCAGGGGAGCTTTTGGAACAGTTTATAAAGGGGTTTTGGCATCAGATGCTAGGAGATTTGTGGCAGTCAAGAAGTTATATAAGGTGGTACAGGAAGGCGAGAAGGAATTCAAAACAGAAGTCACTGTGATTGGGCAGACCCACCATAGGAATTTAGTCGGTTTGCTTGGCTATTGTGATCAGGGTGTGCACCGGCTTCTGTCAAAAAGAAAAGTGTTTGGAGAACATGTGTCAATTTCGGATTGGTGA 522 0.4349 MIASVWLLSITLTISRCPDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEANGGFKEILGRGAFGTVYKGVLASDARRFVAVKKLYKVVQEGEKEFKTEVTVIGQTHHRNLVGLLGYCDQGVHRLLSKRKVFGEHVSISDW* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0801 173 ProSitePatterns Protein kinases ATP-binding region signature. 91 116 IPR017441 GO:0005524
Vvi13g0801 173 Gene3D Phosphorylase Kinase; domain 1 58 159 - -
Vvi13g0801 173 SUPERFAMILY Protein kinase-like (PK-like) 59 155 IPR011009 -
Vvi13g0801 173 FunFam Receptor-like serine/threonine-protein kinase ALE2 72 159 - -
Vvi13g0801 173 ProSiteProfiles Protein kinase domain profile. 85 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0801 173 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 20 158 - -
Vvi13g0801 173 Pfam Protein tyrosine and serine/threonine kinase 87 153 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0801 Vvi-Chr13 9250055 9250801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0801 75 158 Trihelix Transcription Factor Family AT5G38560 54.651 6.83e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g0801 PK_Tyr_Ser-Thr 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0801 - - vvi:104881188 264.233