LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0793	ATGCAGTCGTGTTCCGACGACATCGCCGACGAATTTGACAGCCTCAGCCTCAATTCCACCACCACCACCGCCTCCACCACCGTTGACATCAAGCACAGCTCTAGCTCCGGGTCTGAGGTCACCTGGGCTCCGCCCAGCATCGCCACCTCCTCCTCCAAACCCCACGCGCCCTCCGGAGACCCCTGCTGGCAGGCAATCCGGCGCGCCCAGGCCAGTAGCGACGGCGGCGCCCTCGCCCTCCACGAACTCCGGTTCCTGCGGCGGCTTGGGAGCGGCGACATCGGGAGCGTGTACCTGGTGGAGCTAAAGTGCGCGGGAGGGTGCATGTTTGCGGCGAAGGTGATGGATAAGAAGGAGCTGGTGAGTAGATACAAGGAAGGTAGGGCGAGAATAGAGAGGGAAATATTGGAAATGTTGGATCATCCATTTTTGCCCACGCTTTATGCCACGCTGGACTCTCCACGGTGGTCCTGTCTGTTGACGGAGTTCTGTCCCGGCGGCGACCTCCACGTCCTCCGGCAGCGTCAGCCTGATAAGCGCTTTCACGAAGCTACTGTCCGATTCTACGCATCGGAAGTGATCGTGGCTCTAGAATACCTTCACATGATGGGGATAATCTACCGTGACCTAAAACCCGAAAACGTGCTCGTGAGATCGGACGGTCATATTATGCTCACAGACTTCGATCTCTCATTAAAAAACGATAATTCTACATCAACGGCCCAGATCGTCTCGGATCAAAACCCGGCGTGCAAAAACTCCAGCACATACCCATCCAGCGACTATCCAACGGAGCCGCCTCCATTTGGTGAGTCATCATGCATTATACCCAATTGCATCGTTCCAGCTGTCTCATGCTTCCACCCGATCCGACGGCGGAGAAAGAAGCCACGTCACAGGAGGGCCCTGGAGATCGTGGCGGAGCCGGTGGACGTGCGGTCAATGTCGTTCGTTGGGACGCACGAGTACCTGGCCCCAGAGATCGTATCGGGGGAAGGGCACGGGAACGCGGTGGATTGGTGGACGCTAGGCATTTTCATATTCGAAATGCTGTACGGGACGACGCCGTTTAAGGGCGTGGACAATGAACTGACCCTGGCTAACATCGTGGCCCGAGCGCTGGAGTTCCCGAAGGAGCCATGGGTGCCAGCGGCAGCCAAGGATCTGATCACACAGCTGTTGGTAAAGGAGCCCAGCAGGCGAATGGGAGCCACCATGGGCGCCACCGCCATCAAACACCATGCCTTCTTCAACGGGGTGAACTGGGCGCTGCTGAGATGCGTTAGTCCACCCATCGTTCCCCGACCCTGCAACGACGTAGTTTCACCCCAAGGTTGTACGGACATCTCCATAGAGTATTACTAG	1365	0.5766	MQSCSDDIADEFDSLSLNSTTTTASTTVDIKHSSSSGSEVTWAPPSIATSSSKPHAPSGDPCWQAIRRAQASSDGGALALHELRFLRRLGSGDIGSVYLVELKCAGGCMFAAKVMDKKELVSRYKEGRARIEREILEMLDHPFLPTLYATLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHEATVRFYASEVIVALEYLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKNDNSTSTAQIVSDQNPACKNSSTYPSSDYPTEPPPFGESSCIIPNCIVPAVSCFHPIRRRRKKPRHRRALEIVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGNAVDWWTLGIFIFEMLYGTTPFKGVDNELTLANIVARALEFPKEPWVPAAAKDLITQLLVKEPSRRMGATMGATAIKHHAFFNGVNWALLRCVSPPIVPRPCNDVVSPQGCTDISIEYY*	455

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0793	454	FunFam	Serine/threonine-protein kinase OXI1	168	236	-	-
	Vvi13g0793	454	MobiDBLite	consensus disorder prediction	22	60	-	-
	Vvi13g0793	454	FunFam	serine/threonine-protein kinase D6PK-like	312	435	-	-
	Vvi13g0793	454	Pfam	Protein kinase domain	85	245	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0793	454	Pfam	Protein kinase domain	314	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0793	454	SUPERFAMILY	Protein kinase-like (PK-like)	68	443	IPR011009	-
	Vvi13g0793	454	FunFam	serine/threonine-protein kinase D6PKL2	82	167	-	-
	Vvi13g0793	454	SMART	serkin_6	83	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0793	454	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Vvi13g0793	454	PANTHER	FLIPPASE KINASE 1-RELATED	26	437	-	-
	Vvi13g0793	454	ProSiteProfiles	Protein kinase domain profile.	83	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0793	454	CDD	STKc_phototropin_like	81	436	-	-
	Vvi13g0793	454	Gene3D	Phosphorylase Kinase; domain 1	83	163	-	-
	Vvi13g0793	454	Gene3D	Transferase(Phosphotransferase) domain 1	313	435	-	-
	Vvi13g0793	454	Gene3D	Transferase(Phosphotransferase) domain 1	164	242	-	-
	Vvi13g0793	454	MobiDBLite	consensus disorder prediction	22	57	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0793	Vvi-Chr13	9032615	9034820	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0793	85	454	AGC Kinase Gene Family	AT3G44610	68.848	0.0	525

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vvi13g0793		Pkinase	1.8e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0793	K08286		-	vvi:100254087	912.909