Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0790 ATGGCTGCAGCATTGGCTGGGGATGATCTAGCAAGGTCCACGAGCAGCAGGAGTAAAAGTTTAGGGTCTGGAAGTAGGCGAAGCTGGGCTTCTGCGAGTATTCGTGAGGTGGTGTCAGCACAAGGTGATGTTTTTCAGAGTAGGAGAGAGGATGATGAGGAAGAGTTGAAGTGGGCGGCCATTGAAAGGCTTCCAACCTTTGAGCGGTTGAGGAAGGGGATGCTTAAGCAAGTTTTGGATGATGGGAAGGTTGTCCATGAAGAAGTTGACTTCACCAATCTTGGTATGCAGGAGAGGAAGCATCTCATAGAGAGTATACTTAAGGTTGTTGAAGAAGATAATGAGAAGTTCCTTCTCAGGCTCAGGGAAAGGACTGATAGGGTTGGGGTTGAGATTCCAAAAATCGAAGTCTGGTTTGAGCATTTATCAATAGAAGGAGACGCATATGTTGGAACCAGGGCACTTCCAACTCTGCTCAATTTTACCATGAACTTCATAGAGGGAATACTTGGGCTGATTAGGCTTTCCCCATCTAAGAAAAGGGTAGTCAAGATACTAAAAGATGTGAGTGGGATCGTGAAACCATCAAGAATGACTCTGCTTCTGGGACCTCCAGCCTCAGGGAAAACTACCCTGCTGCAGGCGCTTGCTGGGAAGATGGACAAAGATCTAAGGATGGAAGGAAAAATCACATACTGTGGTCATGAATTATCAGAGTTTGTTCCTCAGAGAACATGTGCTTACATTAGCCAGCATGATCTGCACCATGGTGAGATGACAGTTAGGGAAACGTTGGACTTCTCAGGACGATGTTTGGGAGTTGGAACCAGATATGAACTACTAGCAGAATTGTCAAGACGAGAAAAAGAAGCTGGAATTAAGCCAGATCCTGAGATAGATGCATTCATGAAAGCAACAGCAATGGCAGGCCAAGAAACTAGTTTGGTTACAGATTATGTGCTCAAGATACTGGGATTAGATATCTGCGCTGACATTGTGGTGGGAGATGATATGAGAAGGGGCATTTCTGGTGGAGAAAAGAAGCGTGTTACTATTGGAGAAATGTTGGTTGGACCAGCAAAGGCTCTTTTCATGGATGAAATATCAACTGGTCTGGACAGTTCCACCACTTTTCAGGTTGTCAAGTTTATGAGGCAGATGGTTCATATCATGGAAGTAACCATGATAATCTCTCTTCTCCAACCTGCACCTGAAACTTATGATCTTTTTGATGGCATTATCTTACTATGTGAGGGCCAAATTGTGTACCAAGGTCCCCGTGAAAACATCCTTGAATTCTTTGAAAGCATAGGCTTCAAATGCCCGGAAAGAAAAGGAGTTGCAGACTTCTTGCAAGAGGTGACTTCCAGAAAGGACCAAGAACAATACTGGTTCAGAAAGAATGAACCTTACAGATATATCTCGGTGCCCGAGTTTGTGCAACATTTCAACTCTTTCCACATTGGCCAGAAGCTTTCAGACGACTTTGGAATCCCTTACGATAGGAGCAGAACCCATCCTGCAGCATTGGTGACAGAAAAGTATGGAATCTCCAACTGGGAACTCTTCAAGGCATGCTTTGCCAGGGAGTGGCTATTAATGAAGCGCAACTCTTTTATATACATATTCAAGACAACCCAGATTACAATCATGTCAGTAATTGCCATGACAGTGTTCTTCAGAACAGAAATGAAGCATGGCCAACTGCAAGATGGAGTAAAATTCTATGGGGCTCTGTTTTATAGTCTCATAAATGTAATGTTTAACGGACTGGCAGAACTTGCATTGACTATTTTCAGGCTCCCAGTGTTTTTTAAGCAGAGGGATTTCTTGTTTTACCCGGCATGGGCTTTTGCACTACCAATTTGGGTCCTTAGGATCCCCTTGTCACTGATGGAGTCAGGGATATGGATCATTCTCACGTATTACACTATTGGGTATGCCCCTGCTGCTAGTAGGTTTTTCCGTCAATTGCTGGCATTCTTTGTCGTGCATCAGATGGCCCTATCTCTTTTCCGCTTCATTGCAGCACTTGGAAGAACACTGATTGTGGCCAACACTCTTGCCACCTTTACATTGCTATTGGTTTCTGTTCTGGGTGGATTCGTTGTATCGAAAGATGATATTAAACCATGGATGATATGGGGATATTATGCTTCTCCAATGATGTATGGACAAAATGCCCTTGTCATCAATGAATTTCTTGATGACAGATGGAGCACGCCCAACATCTATACAAGAATTCCAGAACCCACAGTTGGAAAAGCTCTTCTCAAGGCAAGAGGCATGTTTGTGGATGGCTATTGGTATTGGATTTCTGTTGGTGCACTCCTGGGGTTTTCTCTGCTCTTCAATATCTGTTTCATTGCAGCTCTGACATATTTGGACCCTCTGGGAGACTCAAAATCTGTCATTATTGATGAGGAAAATGAAGAAAAGAGTGAGAAGCAGTTTTACTCTAACAAACAGCATGATCTGACCACCCCAGAAAGAAATTCAGCATCTACTGCCCCAATGTCTGAAGGTATTGATATGGAAGTAAGGAACACTAGAGAAAACACCAAAGCAGTTGTCAAAGATGCAAATCATGCACTTACTAAAAGGGGAATGGTGTTGCCCTTCCAGCCCTTATCGCTTGCATTTGAGCATGTGAATTACTATGTTGATATGCCTGCTGGAATGAAGAGCCAAGGAAATGAAGCGGATCATCTCCAACTGCTGCGGGATGCTAGCGGTGCTTTCAGGCCAGGTATTCTAATGGCATTAGTTGGTGTTAGTGGTGCTGGAAAGACCACTTTGATGGATGTGTTAGCAGGAAGGAAAACTAGTGGGTACATTGAAGGAAGTATCAGCATTTCTGGTTACCCCAAAAACCAAGCAACTTTTGCTCGTATTAGTGGTTACTGTGAGCAGACTGATATACATTCTCCAAATGTAACTGTTTATGAATCTCTTGTTTACTCTGCCTGGCTGCGCCTTGCTCCGGATGTCAAAAAGGAAACAAGGCAGGTGTTTGTTGAGGAAGTAATGGATTTGGTTGAGCTTCACCCCCTGAGGAATGCTTTGGTTGGCCTTCCGGGAATAGATGGGCTTTCAACAGAACAGAGGAAGAGGCTGACAGTAGCTGTAGAATTGGTTGCTAACCCCTCCATCATCTTCATGGATGAACCAACGACAGGCCTTGATGCTAGAGCAGCTGCAGTTGTTATGCGTACAGTTAGAAACACGGTGGATACAGGGCGGACTGTTGTCTGCACCATTCACCAGCCAAGCATAGACATCTTTGAAGCTTTTGATGAGCTACTGCTGATGAAGAGAGGAGGACAAATCATTTATGCTGGACCTCTTGGTCGCAATTCTCACAAGCTTGTAGAGTACTTTGAAGCTGTCCCGGGCGTTCCTAAAGTCAGAGATGGTCAAAATCCTGCTACATGGATGCTGGAGATCAGCTCTGCTGCAGTTGAGGCTCAACTTGGTGTGGATTTTGCAGAAATTTATGCTAAATCTGAACTCTATCAGAGGAATCAGGAATTCATCAAAGAGCTGAGCACACCATCACCAGGATCCAAAGACCTTTATTTCCCCACCAAATACTCTCAAAGCTTTATTACTCAATGCAAGGCTTGCTTCTGGAAACAGCACTGGTCTTATTGGAGGAATCCTCCCTATAATGCTCTCCGGTTCTTCTTGACCATAATTATTGGTGTTCTATTTGGATTAATTTTCTGGAACGAAGGAGAGCAGACAGACAAAGAACAAGACCTAATAAATCTGCTGGGAGCTATGTTTGCAGCTGTCTTCTTCCTTGGAGCCACCAACGCTGCTTCAGTGCAGCCTATTGTGGCAATTGAGAGAACAGTCTTCTACCGCGAAAGGGCAGCTGGGATGTATTCAGCTTTGCCTTATGCATTTGCCCAGGTGGCCATAGAGGCAATTTACATCACAATCCAAACTTTTGTTTACACTCTTCTCCTCTACTCTATGATAGGATTCTACTGGCGAGTGGACAAGTTCTTATGGTTCTACTACTACCTACTCATGTGCTTTATTTACTTCACATTGTATGGAATGATGATTGTAGCGCTCACTCCCAACCATCAAATTGCTGCCATTCTTATGTCCTTCTTCCTAAGCTTTTGGAATCTCTTCTCTGGTTTTCTCATCCCTAGGACGCAAATACCAATATGGTGGAGGTGGTACTACTGGGCTTCCCCTGTTGCTTGGACCATCTATGGACTGGTGACATCTCAGGTGGGTGACAAGGAGGATCCGGTTCAAGTACCTGGAGCAGATGACATGTCAGTGAAGCAGTATCTTAAGGAGGCTTTAGGCTTTGAATATGATTTCCTGAGAGCGGTTGCCTTGGCTCATATTGGTTGGGTCCTCCTCTTCTTGTTTGTCTTTGCCTATGGCATTAAGTTCATTAACTTCCAAAGGAGGTAA 4443 0.4416 MAAALAGDDLARSTSSRSKSLGSGSRRSWASASIREVVSAQGDVFQSRREDDEEELKWAAIERLPTFERLRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGVEIPKIEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDVSGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMAGQETSLVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVTIGEMLVGPAKALFMDEISTGLDSSTTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFDGIILLCEGQIVYQGPRENILEFFESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPYRYISVPEFVQHFNSFHIGQKLSDDFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITIMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGLAELALTIFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAASRFFRQLLAFFVVHQMALSLFRFIAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKPWMIWGYYASPMMYGQNALVINEFLDDRWSTPNIYTRIPEPTVGKALLKARGMFVDGYWYWISVGALLGFSLLFNICFIAALTYLDPLGDSKSVIIDEENEEKSEKQFYSNKQHDLTTPERNSASTAPMSEGIDMEVRNTRENTKAVVKDANHALTKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGNEADHLQLLRDASGAFRPGILMALVGVSGAGKTTLMDVLAGRKTSGYIEGSISISGYPKNQATFARISGYCEQTDIHSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMDLVELHPLRNALVGLPGIDGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAGPLGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQRNQEFIKELSTPSPGSKDLYFPTKYSQSFITQCKACFWKQHWSYWRNPPYNALRFFLTIIIGVLFGLIFWNEGEQTDKEQDLINLLGAMFAAVFFLGATNAASVQPIVAIERTVFYRERAAGMYSALPYAFAQVAIEAIYITIQTFVYTLLLYSMIGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAILMSFFLSFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDKEDPVQVPGADDMSVKQYLKEALGFEYDFLRAVALAHIGWVLLFLFVFAYGIKFINFQRR* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0790 1480 CDD ABCG_PDR_domain2 876 1114 IPR034003 -
Vvi13g0790 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 879 1131 IPR003439 GO:0005524
Vvi13g0790 1480 ProSitePatterns ABC transporters family signature. 342 356 IPR017871 GO:0005524|GO:0016887
Vvi13g0790 1480 MobiDBLite consensus disorder prediction 1 32 - -
Vvi13g0790 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 443 IPR027417 -
Vvi13g0790 1480 FunFam ABC transporter G family member 40 893 1123 - -
Vvi13g0790 1480 MobiDBLite consensus disorder prediction 821 839 - -
Vvi13g0790 1480 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 28 1480 - -
Vvi13g0790 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 170 443 IPR003439 GO:0005524
Vvi13g0790 1480 Pfam ABC transporter 908 1058 IPR003439 GO:0005524
Vvi13g0790 1480 Pfam ABC-2 type transporter 1204 1416 IPR013525 GO:0016020|GO:0140359
Vvi13g0790 1480 Pfam ABC-2 type transporter 522 734 IPR013525 GO:0016020|GO:0140359
Vvi13g0790 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1116 IPR027417 -
Vvi13g0790 1480 MobiDBLite consensus disorder prediction 815 841 - -
Vvi13g0790 1480 Pfam ABC-2 type transporter 1088 1157 IPR043926 GO:0140359
Vvi13g0790 1480 Pfam ABC-2 type transporter 401 453 IPR043926 GO:0140359
Vvi13g0790 1480 Gene3D - 894 1127 IPR027417 -
Vvi13g0790 1480 Pfam ABC-transporter N-terminal 103 161 IPR029481 -
Vvi13g0790 1480 Gene3D - 173 475 IPR027417 -
Vvi13g0790 1480 MobiDBLite consensus disorder prediction 11 32 - -
Vvi13g0790 1480 Pfam ABC transporter 186 368 IPR003439 GO:0005524
Vvi13g0790 1480 CDD ABCG_PDR_domain1 172 425 IPR034001 -
Vvi13g0790 1480 Pfam Plant PDR ABC transporter associated 747 805 IPR013581 -
Vvi13g0790 1480 SMART AAA_5 195 428 IPR003593 GO:0016887
Vvi13g0790 1480 SMART AAA_5 916 1108 IPR003593 GO:0016887
Vvi13g0790 1480 FunFam ABC transporter G family member 34 173 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0790 Vvi-Chr13 8897810 8904965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0790 904 1091 Calmodulin-binding Proteins AT2G36910 25.871 1.51e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0790 K08711 - vvi:100264279 2915.56