Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0761 ATGGAAAATTGGGGAGATCGGCTCAGATTTACACAGCCATCCCTTTGGGCAAGAGAGTCACTTCTGGCTTTACAAAGATTGGTTCTTGGTGCAAGCGGTCTTGGTGCTCAAGTTGGTGATTGTTGGCTTCAATATGCAAAGCTCTGCCGCTCAGCTGGTTATTATGAGACAGCTAACCAAGCAATTCTAGAAGCTCAGGCTTCAGATTTGCTTTTGTTGTCGTCGAGTTATGATGATGGGATTTGCTATGTGGAGACCATGAACCTGGATGGCGAGACAAACTTGAAGGTAAAGAGGTTTTTGGAGGTTACTTTGCCATTGGACGATGATGGGACTTTCAATGATTTCAGAGCAACGATAAAATGTGAAGATCCTAACCCGAGCCTCTACACCTTTGTTGGCAATTTTGAGTATGAGCGTCAGGTTTATCCTCTTGATCCTAGTCAGATCCTCCTCAGAGATTCAAAGCTTAGGAACACGGCTTTTGTGTATGGAGTGGTGATATTTACCGGTCATGATAGCAAAGTCATGCAGAATGCAACACAGTCCCCTTCAAAAAGGAGCAGAATAGAAGGAAAAATGGATCAAATCATTTACATTCTTTTCACCCTCCTTGTGGTGATCTCATTGATCAGCTCTATTGGATTTGCCGTAAAGACAAAGTACCAAATGCCCGACTGGTGGTACTTACAGCCCAATAATACCACAAACCTTTATAATCCCAAGAAGCCAGCATTGTCAGGAATTTTCCATCTTGTCACTGCTCTTATACTTTATGGGTATTTAATACCCATCTCACTCTATGTTTCAATTGAAGTTGTGAAGGTCCTGCAAGCAACATTCATTAACCAGGACATACACATGTATGATGAGGAAACTGGGAATACTGCCCAAGCACGGACATCAAATTTGAATGAGGAGCTAGGCCAGGTTGACACAATCCTTTCTGATAAAACTGGCACTCTGACATGCAATCGGATGGATTTTCTCAAGTGTTCGATTGCTGGTTCTACATATGGTTCTGGTTCTAGTGAAGTTGAACTTGCTGCTGCAAAGCAGATGGCTATTGACCTTGAGGAGCAGGGAAATGAACTTTCCAAAATTTTCCCATGCATAAAAACAGTACTGGAACATAAACATGTGATCAAAGGGTTTAGCTTCGAGGACATCCGTCTCATGGGAGGAAATTGGTCAAAAGAGCCCAATGCAGATGTCATTGAATTATTTCTTCAGATACTTGCAGTTTGTCATACTGCAATTCCTGAGCGAAATGAAGAGATTGGGGGCTTTAATTATGAAGCAGAGTCACCAGATGAAGGAAGTTTTCTTGTTGCAGCTCGAGAATTTGGTTTTGAGTTTTGTAAAAGAACGCACACAAGTGTACATGTTCGTGAAAGATATGTTTCTTCTGGACAACCAGTCGAAAGGGAATACCAAATTCTCAATCTGTTGGAGTTCACTAGCAAAAGAAAGCGAATGTCCGTGATTGTGCGGGATGAGGATGGGCAGATTTTTCTCCTTTGCAAGGGTGCAGACAGCATCATCTTTGATCGTTTGGCAAAGAATGGAAGGATATATGAGGAAGCTACTACTAGGCATCTGAATGAATATTCTCTACAGGACCTTTTGGGAGTGGCATCAAATGCCTCAGTGGACAGCAGCAGTGTTCAGTTTGGATTGACTTCTCTCCAGAACTTACTGACAAGCAGCCTAAATTTGGCATCCATATTTTCTACTAAAGTACAACCGTTGCCTCTTTATGAGTGCTTCTCTGTGTCTTTTGCTTCAAAAAGTAACATTCTCCAACTTTACTTCTGA 1818 0.4202 MENWGDRLRFTQPSLWARESLLALQRLVLGASGLGAQVGDCWLQYAKLCRSAGYYETANQAILEAQASDLLLLSSSYDDGICYVETMNLDGETNLKVKRFLEVTLPLDDDGTFNDFRATIKCEDPNPSLYTFVGNFEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIFTGHDSKVMQNATQSPSKRSRIEGKMDQIIYILFTLLVVISLISSIGFAVKTKYQMPDWWYLQPNNTTNLYNPKKPALSGIFHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIHMYDEETGNTAQARTSNLNEELGQVDTILSDKTGTLTCNRMDFLKCSIAGSTYGSGSSEVELAAAKQMAIDLEEQGNELSKIFPCIKTVLEHKHVIKGFSFEDIRLMGGNWSKEPNADVIELFLQILAVCHTAIPERNEEIGGFNYEAESPDEGSFLVAAREFGFEFCKRTHTSVHVRERYVSSGQPVEREYQILNLLEFTSKRKRMSVIVRDEDGQIFLLCKGADSIIFDRLAKNGRIYEEATTRHLNEYSLQDLLGVASNASVDSSSVQFGLTSLQNLLTSSLNLASIFSTKVQPLPLYECFSVSFASKSNILQLYF* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0761 605 Pfam FAT domain 2 69 IPR003151 GO:0005515
Vvi13g0761 605 SUPERFAMILY Calcium ATPase, transduction domain A 69 180 IPR008250 -
Vvi13g0761 605 Gene3D - 64 182 - -
Vvi13g0761 605 Pfam Cation transport ATPase (P-type) 415 519 - -
Vvi13g0761 605 ProSitePatterns E1-E2 ATPases phosphorylation site. 317 323 IPR018303 -
Vvi13g0761 605 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 68 538 - -
Vvi13g0761 605 NCBIfam phospholipid-translocating P-type ATPase 68 540 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vvi13g0761 605 SUPERFAMILY Calcium ATPase, transmembrane domain M 181 587 IPR023298 -
Vvi13g0761 605 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 322 518 IPR023299 GO:0000166
Vvi13g0761 605 Gene3D - 319 553 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0761 Vvi-Chr13 8324472 8326983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0761 68 537 Primary Pumps ATPases AT1G17500 71.130 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0761 K01530 - vvi:100249823 889.026