Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0753 ATGGAGATGGGAGACCAGTACGGACTGCCGGATCTGAGGCAATTCATGGCCAGACCTTCTCATTTTCCAGCCGTTCCTCACCCCACTGAGCCCTATCTGCACCACTATGAGGCCATCATGGTGGGTAGCCACATGGGTGAGGTGGTTGTGCCTCGTGGGTTGGTCGACTTTCATGGTGATTCTGCTACTGCCACAGCTACTCCTACTGCTACTGCAACTGCTGCTGCCACTGCTGCTTCCGTTGTGGGTGTTGGTGGGTTGGAGATGGAGTGTGGTGGTGTTGGAGGAGATGGTGGAAATAGTAGATGGCCGAGGCAGGAGACTCTCACTCTACTTGAGATCAGATCTCGGCTTGATCCTAAGTTCAAGGAGGCTAATCAGAAGGGACCTTTGTGGGCTGAAGTTTCTAGGATAATGGCTGAGGAACATGGGTACCAGAGAAGTGGGAAGAAGTGCAGAGAGAAGTTTGAGAACCTGTACAAGTATTATAAGAAAACTAAAGAAGGTAAAGCCGGAAGACAGGATGGGAAGCACTATAGGTTCTTCCGACAACTTGAAGCACTCTATGGAGAAACAAGCAATCAAGCGTCAGTTTCAGAAACCCATCTTGCTGGGAACACTACTCTTCTTTATCAGACTACAAACAACACCACCATTAACCAAGCAAATCAAGAAGCTTTGCAAGACCACAAGTTCTGTGAGAGCCATAGTTTCTCTAACTCATCTGAATTTGAGACTTCATCTTCAGAAAACAATGATGATGATCTTTCAGCTATTGCCTACATGATGAACCATTCCATGGAGAAGAAAAGAGGGGTAGATGATGGACAAAGTTACAGGAGGGTCAGGAAGAGTTTGAAAGGAAAAATAAAGGAATTTGTGGGCCTCCACATGAAGAAGATAATGGACACACAAGAGGCATGGATGGAGAAGATGCTGACAACTATCGAGCATAAAGAGCAGGAAAGGTTGTCCAGAGAGGAGGAATGGAGGAAGCAAGAGGCAGCTCGGTTCGATCGAGAATATAAATTCTGGGCTAGTGAGAGAGCATGGATTGAAGCCCGAGATGCTGCACTCATGGAGGCTCTGAAGAAATTTACAGGGAAAGAACTAAAATTGTCGTCTCCAGACGGGCTAATGGACAAGGAAATTCAAGACCAGAACGAAAGCATGGAGGACATTGTAAATGAAGTACCTGATGACACTACTTACAGTAGATGGCCAGAACAAGAGCTCTCAAGTTTGATACATCTGAGGACCAGTATGGAATCTAGATTTCAAGACAGCGGGTATTCAGAAGAAAGCCTATGGGAGGAGATTGCCACAAGAATGGGTTGTTTGGGCTATGAGCGAAGTGCAATGAGGTGTAAACAGAAATGGGAGAACATCAACATCTACTTAAACAAGACCACCGAGCACAGCAAGAAGCGCAAAGAGAATTTGAGAACCTGCACTTACTTTCAGCCACTGGACCCCTATCATGGCCAGGAAATCATGGCCAAACAAGGCTCTGAGAATGTAGGACTTCAGAAGAACAGTGAGGATCATCTTTCACCTTCTAACTCCAGCGTGGGTACCACAGTGCATGGTAGCTGCTTGAACATCCTGCTTGATGAAGAACACTTGTGGGAAGATTATGGTGTGAAGCCGAGTATGGGGAAAAACCAGCAAGTCTGGCACAAGTAA 1686 0.4638 MEMGDQYGLPDLRQFMARPSHFPAVPHPTEPYLHHYEAIMVGSHMGEVVVPRGLVDFHGDSATATATPTATATAAATAASVVGVGGLEMECGGVGGDGGNSRWPRQETLTLLEIRSRLDPKFKEANQKGPLWAEVSRIMAEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGETSNQASVSETHLAGNTTLLYQTTNNTTINQANQEALQDHKFCESHSFSNSSEFETSSSENNDDDLSAIAYMMNHSMEKKRGVDDGQSYRRVRKSLKGKIKEFVGLHMKKIMDTQEAWMEKMLTTIEHKEQERLSREEEWRKQEAARFDREYKFWASERAWIEARDAALMEALKKFTGKELKLSSPDGLMDKEIQDQNESMEDIVNEVPDDTTYSRWPEQELSSLIHLRTSMESRFQDSGYSEESLWEEIATRMGCLGYERSAMRCKQKWENINIYLNKTTEHSKKRKENLRTCTYFQPLDPYHGQEIMAKQGSENVGLQKNSEDHLSPSNSSVGTTVHGSCLNILLDEEHLWEDYGVKPSMGKNQQVWHK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0753 561 MobiDBLite consensus disorder prediction 506 525 - -
Vvi13g0753 561 ProSiteProfiles Myb-like domain profile. 101 160 IPR001005 -
Vvi13g0753 561 SMART sant 99 162 IPR001005 -
Vvi13g0753 561 SMART sant 403 466 IPR001005 -
Vvi13g0753 561 Pfam Myb/SANT-like DNA-binding domain 101 188 IPR044822 -
Vvi13g0753 561 Pfam Myb/SANT-like DNA-binding domain 406 492 IPR044822 -
Vvi13g0753 561 Gene3D - 103 165 - -
Vvi13g0753 561 Gene3D - 407 469 - -
Vvi13g0753 561 FunFam trihelix transcription factor PTL-like 103 165 - -
Vvi13g0753 561 CDD GT1 101 167 - -
Vvi13g0753 561 FunFam Trihelix transcription factor GT-2 407 469 - -
Vvi13g0753 561 CDD GT1 405 471 - -
Vvi13g0753 561 ProSiteProfiles Myb-like domain profile. 399 464 IPR001005 -
Vvi13g0753 561 PANTHER FI21293P1 73 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0753 Vvi-Chr13 8081191 8083694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0753 6 556 Trihelix Transcription Factor Family AT5G03680 41.488 3.24e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi13g0753 Myb_DNA-bind_4 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0753 - - vvi:100255868 1046.19