Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g0750 | ATGATATCCGGCGGGGTTAATTTGGTGATGACAGTGATTGGATTCGCGGTGAGTACGATGTTCATCGTTTTCGTCTGCACGCGCCTCGTTTGCGCCCGAATCCAGTTGAACGCGTCGCGGAGATCGTTTCCTGTTGCTTCCAGATCTGATCTTAGTATTTTGGAGCGAGGTTTGCATGGCCTTGAGCCTGCTGTTGTAGCCAACTTTCCAACAAAGAAGTTTGCTGATGAGTTTTTCTCCCCTGCAGAGGATGCTCAGTGCACAGTTTGCCTAGTAGAATACCAAGCTGAAGATATATTGCGTATTCTCCCTTACTGCGGCCACTTCTTCCATGTTACATGCATAGACATATGGCTGCAGCAGCATTCCACATGTCCTGTGTGTCGAATTTCATTGTGGGAGTTTCCTGAGAGAAAATGCTTGATGCAACCCATGTTCAGTTCAGCTGTTCGATCACATTTTGGCATGGAATCCCGCAACACACATTCATACAACTGTTTGTCAACTGGCCGTGGGTTTTCATCGAGATCTCACGACAACCACAGGATGGACCCCATTCAAGAGGATCAGTTTGGGCCAGGAGGTGACGGAGCTGAAGCTCAGGAGAGCACCCTCCCCTTGACCGATGCTAATCAGCCTGCAAAGGACTCTGAAAATAAGCACATAGAAAGCCCATCAAATCCATGA | 687 | 0.4833 | MISGGVNLVMTVIGFAVSTMFIVFVCTRLVCARIQLNASRRSFPVASRSDLSILERGLHGLEPAVVANFPTKKFADEFFSPAEDAQCTVCLVEYQAEDILRILPYCGHFFHVTCIDIWLQQHSTCPVCRISLWEFPERKCLMQPMFSSAVRSHFGMESRNTHSYNCLSTGRGFSSRSHDNHRMDPIQEDQFGPGGDGAEAQESTLPLTDANQPAKDSENKHIESPSNP* | 229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g0750 | 228 | CDD | RING-H2_EL5-like | 86 | 129 | - | - | |
| Vvi13g0750 | 228 | SMART | ring_2 | 87 | 128 | IPR001841 | - | |
| Vvi13g0750 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 133 | IPR013083 | - | |
| Vvi13g0750 | 228 | PANTHER | OS11G0150450 PROTEIN | 1 | 188 | - | - | |
| Vvi13g0750 | 228 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Vvi13g0750 | 228 | SUPERFAMILY | RING/U-box | 81 | 135 | - | - | |
| Vvi13g0750 | 228 | MobiDBLite | consensus disorder prediction | 175 | 228 | - | - | |
| Vvi13g0750 | 228 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi13g0750 | Vvi-Chr13 | 7973946 | 7981742 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi13g0750 | 8 | 177 | C3H Transcription Factor Family | AT2G34990 | 30.682 | 7.06e-20 | 84.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g0750 | - | - | vvi:100267780 | 474.552 |