Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0742 ATGGCCTCCTCGAGGCCACGCGCTCGATCCACCTCTCTTCGCGATTCTGACGCTCCTATGGAGGGTGCTTCTGGCTGGGACGCCATCGAATGGACCAAGATTGAGCCGTTTTCGAGGTCGGTTTCTCTTGGGAATTTGGAATGCTTGCTTGAGGCGGAGCAGATTGTTGCTGAGGGACAAGGGGTTGTTCTGGTTAATACTGATGAGGCAGGTACCCTGTTGGTGACCAATTTTCGTCTTTTTTTTCTGCGCGAGGGAACTAGAGATATCATTCCACTTGGCACGATACCACTGGCAACAATTGAGAAGTTCAGCAAAATAGTTGTGAAACCACCTTCAGCCCCTCGTCAATTTGATAAGGCTCCATCACAAAGACTTCTCCAGGTCATTGGCAAAGATATGAGAATTATTGTCTTTGGGTTTCGCCCTCGAACAAAGCAGAGACGGACAATATTTGATGCATTATTGAGGTGTACAAGGCCTACAAGATTATGGGATCTTTATGCTTTTGCTTCTGGACCTTTCAAATTCACGAACACCAATCCAATGGTACGGTTACTAGATGAGTATTTTCGGCTTCTTGGAAAAGGCTCCTGTCATGCATCAATGGATACGATTGAAGATGGGTCATTCACGTTGTCTAATGATTTGTGGAGAATAAGTGGAATAAATTCCAACTATACATTGTGCCCTACTTACCCCTTCGCCTTGATTGTTCCAAGATCCATTGGTGATGAAGAAATTCTCCAGGCTTCCAGCTTTCGTGCAAAATGCCGATTGCCTGTAGTTTCATGGTGTCATCCAGTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAGCAATACAGATGAAAAGATTGTTGCAGCACTTTGCACTCAACTTGCAGGTGCAAGGGAGACACGGAGGAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGATAGTTTTCTTTGGGATAGACAATATACATGCAATGAGGGAGAGTTTTGCTCGGCTCAGGGACTACTTAGACACTTATGGCACTGCTTCATCAGATGGAATGTCTTCATTCTTGAGACATGGTGGATGGAGTTGGGGCGGAGGCAACCTCAGCAGTATGTCTGCTTCGGTATCAACGCTTGGAGACAGTGGTTGGTTAATACATGTTCAAAGTGTCTTGGCTGGTTCTGCTTGGATTGCTGCACGTGTTGAATTGGAATCAGCTTCAGTGCTTGTCCATTGCAGTGATGGATGGGATAGAACAACTCAGTTAGTCTCACTTGCCAATTTGATGCTTGATCCATACTATCGGACATTTAAAGGGTTCCAGGCACTTGTTGAAAAAGACTGGCTTGCATTTGGTCATCCATTTTCAGATCGCATGGGGATGCCAACTGTATCTGGAAGTGTTAACATGCCCTTTGAATTATCCAGGCAGCCATCAAGTGGGAGTTTCTCATCATCACCCATGCGCCAGCCATCTGGATCACTCGCATCTCAAGCTCCTCCTTCACATGCACAAACTTCTAACAACTACTCTCCCATATTCTTGCAGTGGGTCGATTGTGTATCACAACTGTTGCGGATGTATCCTTTTGCTTTTGAGTTCTCCTCGGCTTTCCTAGTGGATTTCTTGGACTGTGTGCTTTCCTGCCGCTTTGGGAATTTTTTGTGTAATAGTGAAAAGGAAAGGCTGCAATGTGGTGTTTCCGACGCTTGTGGATGCATGTGGAAGTATTTGGCTGATTTGCGTGCTTCTGAGGGAAAGTATCATGTTCACTATAACCTCTTTTTTGATCCAAATAGACATGGAAGTGCAATATTACCTCCTGCGGCAGCTCTAGCACCAACTCTGTGGCCCCAATTTCATCTTCGGTGGGCTTGTCCTTCTGAGGATCAAGCTGGGGAACTTGAAGCCGAGTGCAGGAAAATGGCCGAGAAGTTCTCTGAACTGAAAAAGGAAAAAGAGGTGGCAGAAAGGAAAGCTAAAGAAATCACTACTACCATTGAGTCACTATCAGCAGAGTTAAGAAAGGAGAAGCAACTCAGTAGCTCAGCCATGAACTTGGCCAAGAGGGCCAGCAAGGAAAGTGCAGCCATAAAGCGAGCAGTTGAGTCATTGGGATGCAAGGTTCACTTTTCAGACAGTGGATATTTGGTCGACATTGAAAGGAATCCACAGAAGTCTATGCATTCCCCATCAAGAAGAGAAGCGGATGGTAGTGTGCAACATGATGAGAAATCAGATCTTTCTGTTTCTATATCAGTTGCAGCTGAGGATGCTATTTGTAGCAATCCACTTAGTCGGGTGTGTGAAACTCTATGCCCATTGCACACCCGAGAGGGAGGATGCAGGTGGCCAGATGCTGGTTGTGCACAGTTTGGAAGCCAGTTTGTGGGTCTGAAGGCTAACTTTGATGCATTTGATCGTCTTTCAATTTTTGACGGTTATTTTGAATCTTGA 2538 0.4551 MASSRPRARSTSLRDSDAPMEGASGWDAIEWTKIEPFSRSVSLGNLECLLEAEQIVAEGQGVVLVNTDEAGTLLVTNFRLFFLREGTRDIIPLGTIPLATIEKFSKIVVKPPSAPRQFDKAPSQRLLQVIGKDMRIIVFGFRPRTKQRRTIFDALLRCTRPTRLWDLYAFASGPFKFTNTNPMVRLLDEYFRLLGKGSCHASMDTIEDGSFTLSNDLWRISGINSNYTLCPTYPFALIVPRSIGDEEILQASSFRAKCRLPVVSWCHPVTGAVLARSSQPLVGLMMNMRSNTDEKIVAALCTQLAGARETRRKLYIADARPRKNALANGAMGGGSESSSHYFQSEIVFFGIDNIHAMRESFARLRDYLDTYGTASSDGMSSFLRHGGWSWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVELESASVLVHCSDGWDRTTQLVSLANLMLDPYYRTFKGFQALVEKDWLAFGHPFSDRMGMPTVSGSVNMPFELSRQPSSGSFSSSPMRQPSGSLASQAPPSHAQTSNNYSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDFLDCVLSCRFGNFLCNSEKERLQCGVSDACGCMWKYLADLRASEGKYHVHYNLFFDPNRHGSAILPPAAALAPTLWPQFHLRWACPSEDQAGELEAECRKMAEKFSELKKEKEVAERKAKEITTTIESLSAELRKEKQLSSSAMNLAKRASKESAAIKRAVESLGCKVHFSDSGYLVDIERNPQKSMHSPSRREADGSVQHDEKSDLSVSISVAAEDAICSNPLSRVCETLCPLHTREGGCRWPDAGCAQFGSQFVGLKANFDAFDRLSIFDGYFES* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0742 845 ProSiteProfiles Myotubularin phosphatase domain. 195 648 IPR010569 -
Vvi13g0742 845 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 212 652 IPR029021 -
Vvi13g0742 845 SUPERFAMILY PH domain-like 48 171 - -
Vvi13g0742 845 CDD PTP-MTM-like 258 550 - -
Vvi13g0742 845 PANTHER MYOTUBULARIN-RELATED 30 772 IPR030564 -
Vvi13g0742 845 Pfam Myotubularin-like phosphatase domain 168 589 IPR010569 -
Vvi13g0742 845 MobiDBLite consensus disorder prediction 753 771 - -
Vvi13g0742 845 MobiDBLite consensus disorder prediction 1 21 - -
Vvi13g0742 845 ProSitePatterns Tyrosine specific protein phosphatases active site. 437 447 IPR016130 GO:0016311|GO:0016791
Vvi13g0742 845 Gene3D - 59 159 IPR011993 -
Vvi13g0742 845 Coils Coil 659 707 - -
Vvi13g0742 845 MobiDBLite consensus disorder prediction 503 532 - -
Vvi13g0742 845 MobiDBLite consensus disorder prediction 749 771 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0742 6 844 Protein tyrosine phosphatase (PTP) family AT3G10550 68.409 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0742 K18081 - vvi:100252361 1662.89