Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0738 ATGGCATCATGCAATGACGACTTCCCTCTAATTGAAGATGATGGCCCCCACCACGCGCTCACACACCACCACCATCATCATCACCAGCAGCAGCAGCACCAGGTGTTTCCCAGTGCCAGCACCGAGAAAGTCTCCGGCGCCGGAGATTCCGACGCCGACGCCGATTCCGGAGGCGCCGCTTTCTACTCTCAGGCCCACGACGTCAACCCCTTTGCCGTTGTCGCTGCCGCCGAGGAGTCCGATCCGGCCAAGTCCGGTGCCTCAACTCCGAATGGTAAGCGGAATCCTTACTACTACAAGAAATTAAAGCCCAGCGGTGCCTCTGAGTCCGGCAGCGGGGAGTACCGAGTGGATTACCGGAAAGACCGGGAGGAGTGGAGCGACTCAGCCATTTCGTGTCTCCTGGAGGCCTATACGGAGAAGTTTACGCAGCTGAATCGGGGGAATCTTCGGGGTAGGGATTGGGAGGAGGTTGCAGAGATTGTTAGTGAGAGGTGTGATAAGCAAAAATCATGTAAGAGTGTGGAACAATGCAAAAACAAGATCGATAACTTAAAGAAGAGGTACAAGGTAGAATTGCAGAGGATGAATAGTGGGGGTTTGCCGGTGAGTCACTGGCATTGGTTCAAGAAGATTGAGGCCATTGTTGGGAATTCTCCATCGTTTAAGACTGGTTCAGATGAGGATAGGTCTGGTGGAGCTTCGTCTTATATGCTCAGGCAATCAAAGAGATATGCACCTAGCACTGTTACTTTTGCAAACAACATGAAACCCAAAACATTGTCAAATCCAAAATGGCGGAGGGTGGTGTTTAAAATTAGTGGTGCTGCGTTAGCTGGAAACTGTCAGAACATTGATCCCAAGGTGGCAATGCAGATTGCTAGGGAGGTGACAACAGCTTGCCGCCTTGGTGTCGAGGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTTTGTGGGGACTCATGGGTATCTGCTACTGGTCTAGATAGACCTACAGCATACCAAATTGGCATGATGGCAACTGTTATGAACTCCATATTGCTTCAATCAGCTTTAGAGAAGTTAGGTGTTCAGACGCGTGTGCAAAGTGCATTTCCAACACCAGAGGTTGCAGAACCATATAGCAGGCAACGGGCCATTAGGCATCTTGAGAAAGGAAGAGTAGTCATATTTGGCGGCATTGGTGCAGGCACTGGAAATCCTCTCTTCACCACTGATACAGCAGCAGCTCTGAGAGCTTCTGAGATTAATGCGGATGCAGTCCTTAAAGGTACAAATGTAAACGGAATCTATGATTGCCATTCTGCTAATGACAATGTGGTGCTGGATCACCTCTCCTTCAGAGAGGTGGCTTCGAGAGGCATTTCCTCCATGGACATGATGGCAATAACATATTGTGAAGAGAATGGAATTCCTGTTGTGATCTTTAACCTGCTTGAGCCGGGGAACATTTCAAGAGCCTTATGTGGAGACCAAGTTGGCACCTTGATGGATCAAGCAGGAAGAATTAGTTGA 1515 0.4924 MASCNDDFPLIEDDGPHHALTHHHHHHHQQQQHQVFPSASTEKVSGAGDSDADADSGGAAFYSQAHDVNPFAVVAAAEESDPAKSGASTPNGKRNPYYYKKLKPSGASESGSGEYRVDYRKDREEWSDSAISCLLEAYTEKFTQLNRGNLRGRDWEEVAEIVSERCDKQKSCKSVEQCKNKIDNLKKRYKVELQRMNSGGLPVSHWHWFKKIEAIVGNSPSFKTGSDEDRSGGASSYMLRQSKRYAPSTVTFANNMKPKTLSNPKWRRVVFKISGAALAGNCQNIDPKVAMQIAREVTTACRLGVEVAIVVGGRNFFCGDSWVSATGLDRPTAYQIGMMATVMNSILLQSALEKLGVQTRVQSAFPTPEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFTTDTAAALRASEINADAVLKGTNVNGIYDCHSANDNVVLDHLSFREVASRGISSMDMMAITYCEENGIPVVIFNLLEPGNISRALCGDQVGTLMDQAGRIS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0738 504 PANTHER URIDYLATE KINASE 119 503 - -
Vvi13g0738 504 FunFam Aspartate/glutamate/uridylate kinase family protein 126 191 - -
Vvi13g0738 504 Pfam Amino acid kinase family 268 477 IPR001048 -
Vvi13g0738 504 FunFam Uridylate kinase isoform A 258 503 - -
Vvi13g0738 504 Pfam Myb/SANT-like DNA-binding domain 123 215 IPR044822 -
Vvi13g0738 504 MobiDBLite consensus disorder prediction 79 113 - -
Vvi13g0738 504 MobiDBLite consensus disorder prediction 13 58 - -
Vvi13g0738 504 Hamap Uridylate kinase [pyrH]. 264 498 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vvi13g0738 504 CDD AAK_UMPK-PyrH-Ec 267 496 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vvi13g0738 504 Coils Coil 168 195 - -
Vvi13g0738 504 Gene3D - 126 191 - -
Vvi13g0738 504 Gene3D - 257 503 IPR036393 -
Vvi13g0738 504 SUPERFAMILY Carbamate kinase-like 264 496 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0738 Vvi-Chr13 7685257 7697662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0738 126 226 Trihelix Transcription Factor Family AT3G14180 42.574 6.26e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi13g0738 AA_kinase 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0738 - - vvi:100260933 970.689