Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0732 ATGGGGAGAAGGAAAATCGAGATTAAAAAGATTGAATCCAAGGTCCGTTTGATGGTGACTTTAAGCAAACGGCAAGCTGGATTGTTCAAGAAAGCCCAACAACTTTCACAACTGTCCGGGGCAACTGTTGTTGTCCTTGTCTTCTCACCCACCGAGAAGCCTTTCACCTCATCTTCTGGTGGAAACTTTGATGAGACGATTGCTTCTTTTTATGGAGGTCAAGTTCCAGAATCCACATCCCAACCTCTGTGGTGGGAAACAGATTTGAGCTCCCAACCCACCGGGAAGCCTTTCACCTCCTCTTCTGGTGGAAACTTTGATGAGACGATTGCTTCTTTTCATGGAGGTCAAGTCCTAGAATCCACATCCCAACCTCTGTAA 381 0.4619 MGRRKIEIKKIESKVRLMVTLSKRQAGLFKKAQQLSQLSGATVVVLVFSPTEKPFTSSSGGNFDETIASFYGGQVPESTSQPLWWETDLSSQPTGKPFTSSSGGNFDETIASFHGGQVLESTSQPL* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0732 126 MobiDBLite consensus disorder prediction 87 108 - -
Vvi13g0732 126 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi13g0732 126 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi13g0732 126 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi13g0732 126 CDD MADS_SRF_like 2 72 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi13g0732 126 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Vvi13g0732 126 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Vvi13g0732 126 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi13g0732 126 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi13g0732 126 MobiDBLite consensus disorder prediction 87 110 - -
Vvi13g0732 126 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vvi13g0732 126 PANTHER MADS BOX PROTEIN 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0732 Vvi-Chr13 7573083 7573463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0732 1 74 MADS-box Gene Family AT3G30260 42.308 1.43e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi13g0732 SRF-TF 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0732 - K12412 vvi:104881183 225.713