Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0728 ATGGTTCTCAAGACTGAACTCTGTCGCTTCAGTGGTGCAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTTAAGCCTTCAAAGCTTACCTGGACGGCTATGTATAGAAAGCAACATAAGAAGGACATAGCTGCGGAGGCTGTGAAGAAGAGGCGTCGTGCCACCAAGAAGCCATTCTCCAGATCCATAGTTGGTACTACCTTGGAGGCGATACAGAAGAGGAGAACTGAAAAACCAGAAGTTCGAGATGCTGCTAGGGAGGCTGCTCTTCGTGAAATTAAGGAGAGGGTCAAGAAAACCAAGGATGAGAAGAAAGCAAAGAAAGCAGAAGTGATGGCCAAAACTCAGAAGTCTCAGAGCAAGGGTAATGCAGGCAGGGCTGCTGCACCAAAGGGCCCGAAACTAGGAGGTGGTGGTGGAAAACGCTGA 495 0.4626 MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKRRRATKKPFSRSIVGTTLEAIQKRRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVMAKTQKSQSKGNAGRAAAPKGPKLGGGGGKR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0728 164 FunFam 60S ribosomal protein L24 3 64 - -
Vvi13g0728 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vvi13g0728 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vvi13g0728 164 SMART 4TRASH 8 46 IPR011017 -
Vvi13g0728 164 Gene3D - 69 151 - -
Vvi13g0728 164 MobiDBLite consensus disorder prediction 117 136 - -
Vvi13g0728 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vvi13g0728 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 142 IPR000988 -
Vvi13g0728 164 MobiDBLite consensus disorder prediction 117 164 - -
Vvi13g0728 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vvi13g0728 164 Coils Coil 112 136 - -
Vvi13g0728 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0728 Vvi-Chr13 7502031 7505927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0728 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 82.166 9.07e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0728 K02896 - vvi:100252367 254.988