LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0725	ATGTTGGCAGTGGCTGGGGGAGAAGGAGCGCAGATGGAGAAAGATTTCGATTCCAAGCTTAGGATTCAGAGCAATTCCTCTAATGGTGGCACTGCTGGTGGCGGCGGCGGCGGTGGCGGTGGAGGTGGAGGGGGTGGGGGTGCGGGTGCGGTTCAGAGATCTAAGAGCTTTGCGTTTAGGGCTCCCCAGGAGAATTTTACTATTCAGGATTTCGAATTGGGGAAGATCTACGGCGTCGGGTCCTATTCCAAGGTTGTGAGGGCAAGGAAGAAGGACACTGGAATTGTGTACGCTTTGAAAATCATGGACAAAAAGTTCATCACAAAAGAAAATAAAACAGCTTATGTGAAGTTAGAACGCATTGTGCTTGATCAATTGGATCACCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGAAAGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGCCGGAGAACTTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTTGGGAGTGTAAAGCCTATGCAGGATAGTCTAATTACCGTCCTTCCCAATGCAGCATCAGATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGAAACGATCTTTGGGCACTTGGCTGCACTTTGTACCAGATGCTTTCTGGAACTTCTCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCGAGAGATATCCGATTTCCAAATTACTTTTCCGATGAAGCTCGAGATCTCATTGACCGGCTATTGGATACAGAACCCAGCAGAAGACCAGGTGCTGGACGTGATGGTTATGCTTCACTCAAGATGCATCCTTTCTTCAATGGAGTTGACTGGAAGAATTTACGCTCACAAACCCCTCCTAAACTTGCAATGGAAGCGATGGCTCATTCAAGTGAAGGAGATGATGGTCAGGATTCATGGAACCCTGCACACATTGGGGATGGCTCGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAACAAGCCAAAACTGATCTATGTTGACCCTGCGAAGCTGATGGTAAAGGGAAATATAATCTGGTCTGACAACCCTAATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGGAAAAAGGCAATAGAGGGGCTTCAAAATCGATGA	1548	0.4399	MLAVAGGEGAQMEKDFDSKLRIQSNSSNGGTAGGGGGGGGGGGGGGGAGAVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRARKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSENEARFYAAEVVDALEYIHSLGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSLITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDIRFPNYFSDEARDLIDRLLDTEPSRRPGAGRDGYASLKMHPFFNGVDWKNLRSQTPPKLAMEAMAHSSEGDDGQDSWNPAHIGDGSARQNDGNSGATSSSEAPGSVTRLASIDSFDSKWQQFLEQGESVLMISMVKKIQKLTNKKVQLILTNKPKLIYVDPAKLMVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDSKQRAWQWKKAIEGLQNR*	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0725	515	CDD	STKc_PDK1	69	338	IPR039046	GO:0004674
	Vvi13g0725	515	Gene3D	Transferase(Phosphotransferase) domain 1	155	352	-	-
	Vvi13g0725	515	FunFam	3-phosphoinositide-dependent protein kinase 2-like	155	353	-	-
	Vvi13g0725	515	Pfam	Protein kinase domain	73	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0725	515	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Vvi13g0725	515	FunFam	3-phosphoinositide-dependent protein kinase 1	385	515	-	-
	Vvi13g0725	515	Gene3D	Phosphorylase Kinase; domain 1	69	154	-	-
	Vvi13g0725	515	Gene3D	-	381	515	IPR011993	-
	Vvi13g0725	515	MobiDBLite	consensus disorder prediction	382	400	-	-
	Vvi13g0725	515	FunFam	3-phosphoinositide-dependent protein kinase 2-like	69	154	-	-
	Vvi13g0725	515	Pfam	PH domain	412	514	IPR033931	-
	Vvi13g0725	515	MobiDBLite	consensus disorder prediction	22	49	-	-
	Vvi13g0725	515	ProSiteProfiles	Protein kinase domain profile.	71	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0725	515	SMART	serkin_6	71	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g0725	515	PANTHER	SERINE/THREONINE-PROTEIN KINASE	62	353	-	-
	Vvi13g0725	515	MobiDBLite	consensus disorder prediction	357	400	-	-
	Vvi13g0725	515	SUPERFAMILY	Protein kinase-like (PK-like)	58	357	IPR011009	-
	Vvi13g0725	515	SUPERFAMILY	PH domain-like	332	514	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0725	Vvi-Chr13	7478035	7486840	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0725	12	515	AGC Kinase Gene Family	AT3G10540	80.159	0.0	837

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_PDK1	Vvi13g0725		Pkinase	2.5e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0725	K06276		-	vvi:100264394	995.727