Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0717 ATGGGGGTGGAACAAGAAAATGGTACTCCTACAGAGATGGTGCCGGCTTCCGAACAGGATATCTCTGATGAGTTAGATGTGAAAGTGAAGAAGTATCTTAGAGGTGAAGGTGCTAATTTAGAGGCTTTACAAGATAAGAAATTGAAGGGTCAACTTGTTATTAGAGAAGAATTATATGGAAAATCTGCAAAAGCTGCTGCCAAGGCTGAGAAGTGGCTTATGCCAAGTGAGGGAGGCTATTTGGAGGCAGAAGGTATAGAGAAGACTTGGAGGATCAAACAAGAGTCTATTGCACGTGAAGTGGATATCCTAAGCTCAAAGAATCAATATGATATAGTCTTACCAGAGCTTGGTCCTTACACTCTGGATTTCACCTCAAGTGGTCGGTATATGGCAGTTGGAGGACGTAAGGGCCACCTGGCTATCATAGATATGAAAAATATGGGTGTAATTAAAGACTTTCAGGTTAGGGAAACAGTCCGTGATGTGGTGTTCTTGCACAATGAGCTGTTTTTTGCTGCTGCCCAAAAGAAGTATCCATATATTTATAACCGGGATGGGACAGAACTTCACTGTCTAAAGGAGCATGGTTCAGTACTAAAACTTCAGTTTCTGAAAAACCATTTCCTCTTAGCATCCATAAATAAATTTGGGCAGCTTCATTACCAAGATGTTACTATGGGTGAAATGGTTGGTAACTACCGGACTGGTCTAGGCCGTACTGCTGTAATGCAGGTGAATCCATTCAATGGAGTTGTTGGTTTGGGTCATTCTGGTGGTATAGTGACCATGTGGAAGCCTACCAGCTCTGCTCCCCTCGTGAAGATGCTGTGTCATCATGGACCCATCTCAGCTTTAGCATTCCACCCCAATGGACATCTCATGGCCACAGCTGGCATGGATAAGAAAATCAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTCCAAACTTTACCAGGCCATGCCAAGACCTTGGACTTCAGTCAGAAAGGTTTGCTTGCCACTGGAACTGGCTCATTTGTACAAATTCTCGGAGATTTCTCAGGGACTGAAAATTATAGTCGGTATATGGGTCATTCCATGGCGAAAGGCTACCAGATAGGAAAAGTGCTGTTCCGACCATACGAAGATGTTCTGAGCATAGGGCACTCTATGGGTTGGTCTTGTATTCTCATCCCTGGATCTGGAGAACCCAACTTCGATTCATGGGTGGCAAACCCGTTTGAAACATCAAAACAGCGGAGAGAGAAGGAAGTACACTCTCTTCTCGACAAGCTCCCGCCTGAAACAATTATGCTGGACCCCACCAAGATTGGTACAGTGAGGCAATCAAGGAAGAGAGAGAAGCCAACAAAGCAGGAGAGAAAGGCCGAAATGGAGGCTGCTGTGGAAGATGCCAAGAGCATTCCCCTGAGGAAGAAAATGAAGGGGAAGAACAAGCCGAGTAAGAAAGTGAAGAAGAGGGAGGAGGCAGTTGCCAGAGCCAAGAAGCCATTCCTGGAGCGGCAAATGGAGGAAGAAAATTTGTCTACAAAGAAACAGAAAATAAGTGGGGAAATTGAACTGCCCAAATCTCTACAGCGCTTTGCTCGCAAGAAAGCAACAACATGA 1611 0.4488 MGVEQENGTPTEMVPASEQDISDELDVKVKKYLRGEGANLEALQDKKLKGQLVIREELYGKSAKAAAKAEKWLMPSEGGYLEAEGIEKTWRIKQESIAREVDILSSKNQYDIVLPELGPYTLDFTSSGRYMAVGGRKGHLAIIDMKNMGVIKDFQVRETVRDVVFLHNELFFAAAQKKYPYIYNRDGTELHCLKEHGSVLKLQFLKNHFLLASINKFGQLHYQDVTMGEMVGNYRTGLGRTAVMQVNPFNGVVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHPNGHLMATAGMDKKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGTENYSRYMGHSMAKGYQIGKVLFRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIPLRKKMKGKNKPSKKVKKREEAVARAKKPFLERQMEEENLSTKKQKISGEIELPKSLQRFARKKATT* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0717 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Vvi13g0717 536 SMART WD40_4 311 345 IPR001680 GO:0005515
Vvi13g0717 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Vvi13g0717 536 FunFam Os01g0183100 protein 185 379 - -
Vvi13g0717 536 MobiDBLite consensus disorder prediction 1 20 - -
Vvi13g0717 536 Gene3D - 90 243 IPR015943 GO:0005515
Vvi13g0717 536 PANTHER WD-REPEAT PROTEIN BING4 13 531 IPR040315 -
Vvi13g0717 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Vvi13g0717 536 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Vvi13g0717 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Vvi13g0717 536 SUPERFAMILY WD40 repeat-like 113 383 IPR036322 GO:0005515
Vvi13g0717 536 MobiDBLite consensus disorder prediction 484 514 - -
Vvi13g0717 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Vvi13g0717 536 Gene3D - 244 343 IPR015943 GO:0005515
Vvi13g0717 536 MobiDBLite consensus disorder prediction 1 16 - -
Vvi13g0717 536 MobiDBLite consensus disorder prediction 440 472 - -
Vvi13g0717 536 SMART BING4CT_2 355 435 IPR012952 -
Vvi13g0717 536 MobiDBLite consensus disorder prediction 440 514 - -
Vvi13g0717 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0717 118 331 U-box Gene Family AT1G04510 23.894 6.43e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0717 K14768 - vvi:100241077 1031.55