LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0714	ATGACGGATTTTCAACCACTGCAACAGAAGCCTGAAAGCACAGATGCCCGGAGTGATTTTGAAAGGGGATTGGAGGAGTTGATGCGTGGGCATTTGGATGATTGTATGTCATTTGCTTCGTGTAGCACTATGCGTAATCCAGAGGATGAGGATGAAGAGGGTGATCAGCTTGTACGAAGGAGAAGGAGGTCAGATCTTGAAGGGGATGATTTGGCGGAGTCGTCTGCAGCTCGTCGTCGTCACTCACGGATTTTGAGCAGGTGGGCTGCACGACAGGCACAGGAAATGATAACCACCATTGAGAGAAGGAATCGTGAGACAGAGTTGATGGCACTAGCAGGTCTGCATTCAGTTTCCACACTAGATTTTTCATTTTTGAGGGGGTCTCAGTCTCCAACTTCGAGACAAGGGGCTGTTGACAGGCCCAGTAGTCAAGCTTCTTCAATTTTGCAAATGTGGCGGGAGTTGGAAGATGAACATGTATTGGATCATGCCAGGGAAAGAGTGAGGGAAAGATTGAGGCAGCAAAGGAGTGTTGAATCTAATACTAATGCATCAATTATGTCAGAGAGTCGGGGCAGTGAGAATCAGGGTAGTTTGGAGGATGCAAGCGAGAGTGAGAATGATTATGGGACTTGGTCACATGATCAAGTGGAGCAACCGAATGATCGGGCGGAAAATAACGGGTCTAGCCGAGAGCAATCTCCTGATATTGGGGAAATTGAGAGGGAGAGGGTGAGGCAAATTGTTCGGGGATGGATGGATAGTGGAATGAGTGATCATTCCACTAATGTAACACGAAGGAACAATAGTCCTAGAGCAGAATGGCTTGGTGAAACAGAGCGTGAAAGGGTGAGAAATATTAGAGAATGGGTGCAAATGGCAAGTCAGCAGAGAGGGTCTCGTGGGGGAAGAAGGGAAGGTCAAATTGCTGGAGTTGGAGCTCAAGTTGACAGAGCTCGTGAAGGGCTAGTTGCTGATCAAGATGAAGGCCAACCAGAGCATATTCGAAGGGACGTACTTAGATTCCGCGGAAGACAAGCACTGCTTGATTTGCTTGTGAGGATCGAGACAGAAAGACAGAGGGAACTTCAGGGTTTGCTGGAGCATCGGGCAGTTTCTGACTTTGCTCATCGTAACCGCATTCAGTCATTTCTCAGAGGTAGATTCTTGCGGAATGAAAGACCTATTGAAGAGGAGAGACCGCCTTCAATGGCGGCAAGTGAGTTAGTTCAATTAAGGCAACGGCATACTGTTTCTGGTCTAAGGGAAGGCTTTCGCTCCAGATTGGAAAATATTGTTCGTGGTCAAGTAAGCAGCCATTCTGATACTCAAACTAACAATAATAGCAATGATTCTACAAACAATCAGACTCAAACAAACACTTCACAGGAGCTACAACATGAAAATAATGAGCAATCACAACCTAGGAGTCAGGAAAATGACATCCAACTTCCGGAGGATCTTGCAGGAAACATGGAAAGCACCACTCCTATTGAAAGCATGAATTGGCAAGAAACTGCTAATCAAGGAGGGAATTGGCATGAACAAGCTGCTGCAGATGAGAGGGAGAACTGGCAACAGTCAACCTATGATGAGTTCAATGATTGGAGGGATGGCGCAGCAGAAGATATGGACGGAACTTGGCAGGAAAATTCAGTTAATGATTGGCCCCAGGGAAGCCCAGGAAATGCACATGGAGGTGAAGTTGTTCCACAAGAAACCCATGGGGGTTGGTCTGAGAATGTCTCTCGTGAAGCTGTGGAAAGTTGGTCAGAAGGGCCTTCTGATCCTCCAAGAACTCGACGTACCGTTCCAGTTAGAAGAATAAATCGATTCCACCCACCAGATGATGATAATGTATACAGTATGGAACTCAGAGAACTTCTCAGCAGGAGAAGTGTCTCAAATCTTCTACGTAGTGGTTTTCGTGAGAGTTTAGACCAATTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCGCCCATTGATTGGGATCTGCATAGAAACTTGCCCACTCCTGCGTCACCAGAGCAGGATGAGGAGCAGCAAAGGGATGAGCAGAACGAGGATCAACGTGATTCCATTGCTAGACCTTCATTGGTGCTACCATCTCCACCAGTACCCCCACCACAGCCACTTTGGCACCAGGATTTACATCACACAAATTGGCCTCGTCACAGCATGCATCGTTCAGAAATTGAATGGGAAATGATTAATGATCTGAGAGCAGATATGGCAAAGCTTCAGCAAGGCATGAATCACATGCAAAGGATGTTGGAGGCTTGCATGGATATGCAGCTGGAGTTGCAGCGCTCAGTCAGACAGGAAGTATCTGCTGCTCTGAACCGATCAGCTGGTGAACCAGGGATGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGTGGAGGAAAGTGCCCATTGTGCCGAGCCCCGATTGTTGAGGTCATCCGAGCTTACTCTATACTGTAA	2589	0.4697	MTDFQPLQQKPESTDARSDFERGLEELMRGHLDDCMSFASCSTMRNPEDEDEEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRETELMALAGLHSVSTLDFSFLRGSQSPTSRQGAVDRPSSQASSILQMWRELEDEHVLDHARERVRERLRQQRSVESNTNASIMSESRGSENQGSLEDASESENDYGTWSHDQVEQPNDRAENNGSSREQSPDIGEIERERVRQIVRGWMDSGMSDHSTNVTRRNNSPRAEWLGETERERVRNIREWVQMASQQRGSRGGRREGQIAGVGAQVDRAREGLVADQDEGQPEHIRRDVLRFRGRQALLDLLVRIETERQRELQGLLEHRAVSDFAHRNRIQSFLRGRFLRNERPIEEERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQVSSHSDTQTNNNSNDSTNNQTQTNTSQELQHENNEQSQPRSQENDIQLPEDLAGNMESTTPIESMNWQETANQGGNWHEQAAADERENWQQSTYDEFNDWRDGAAEDMDGTWQENSVNDWPQGSPGNAHGGEVVPQETHGGWSENVSREAVESWSEGPSDPPRTRRTVPVRRINRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPASPEQDEEQQRDEQNEDQRDSIARPSLVLPSPPVPPPQPLWHQDLHHTNWPRHSMHRSEIEWEMINDLRADMAKLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEPGMSVETSEDGSKWGHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL*	863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	679	694	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vvi13g0714	862	Pfam	Zinc finger, C3HC4 type (RING finger)	807	854	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	257	273	-	-
	Vvi13g0714	862	SUPERFAMILY	RING/U-box	809	855	-	-
	Vvi13g0714	862	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	110	862	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	437	481	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	538	620	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	178	235	-	-
	Vvi13g0714	862	ProSiteProfiles	Zinc finger RING-type profile.	810	849	IPR001841	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	255	278	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	41	78	-	-
	Vvi13g0714	862	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	797	860	IPR013083	-
	Vvi13g0714	862	Coils	Coil	739	759	-	-
	Vvi13g0714	862	CDD	mRING-HC-C3HC5_NEU1	807	859	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	52	78	-	-
	Vvi13g0714	862	Coils	Coil	90	110	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	173	242	-	-
	Vvi13g0714	862	MobiDBLite	consensus disorder prediction	665	694	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0714	Vvi-Chr13	7290386	7299923	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0714	810	856	C3H Transcription Factor Family	AT3G06140	42.553	1.39e-06	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0714	-		-	vvi:100241098	1599.72