Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0703 ATGGTGACTTTCAGAAAACGGCGAGCTGGATTGTTCAAGAAAGCCCAGCAACTTTCACAACTGTCCGGGGCAACTGTTGCTGTCCTTGTCTTCTCACCCGCTGGGAAGCCTTTCACCTTCTCTTCTGGTGGAAACTTTGATGAGACGATTGCTTCTTTTCAGGGAGGTCAAGCCCCAGAACCCACATCCCAACCTCTGTGGTGGGAAACAGATTTGAGCTCCCAACCCACCGGGAACCCTTTCACCTCCTCTTCTGGTGGAAACTTTGATGAGACGATTACTTCTTTTCAGGGAGGTCAAGTCCCAGAATCCACATCCCAACCTCTATGGTGGGAAACAGATTTGAGCTCCCAACCCACCGGGAACCCTTTCACCTCCTCTTCTGGTGGAAACTTTGATGAGACGATTGCTTCTTTTCAGGGAGGTCGAGTCCCAGAATCCACATCCCAACCTCTGTGGTGGGAAACAGATTTGAGCTCCCAACCCACCGGGAACCCTTTCACCTCCTCTTCTGGTGGAAACTTTGATGAGACGATTGCTTCTTTTCAGGGAGGTCAAGTCCCAGAATTCAAATCCCAACCTCTGTGGTGGGAAGCAGATTTGAGCCGCATTGCTGATCTGGATCAACTCCAAGCATACAAGGAGTCATTGCTGAAGCTTAGAGAAAATGTTTTGGAAAGAATCCAGCAACTACAACACCCGGAAATGTAA 711 0.4937 MVTFRKRRAGLFKKAQQLSQLSGATVAVLVFSPAGKPFTFSSGGNFDETIASFQGGQAPEPTSQPLWWETDLSSQPTGNPFTSSSGGNFDETITSFQGGQVPESTSQPLWWETDLSSQPTGNPFTSSSGGNFDETIASFQGGRVPESTSQPLWWETDLSSQPTGNPFTSSSGGNFDETIASFQGGQVPEFKSQPLWWEADLSRIADLDQLQAYKESLLKLRENVLERIQQLQHPEM* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0703 236 PRINTS MADS domain signature 6 21 IPR002100 GO:0003677|GO:0046983
Vvi13g0703 236 PRINTS MADS domain signature 21 42 IPR002100 GO:0003677|GO:0046983
Vvi13g0703 236 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Vvi13g0703 236 SMART madsneu2 2 43 IPR002100 GO:0003677|GO:0046983
Vvi13g0703 236 MobiDBLite consensus disorder prediction 53 105 - -
Vvi13g0703 236 SUPERFAMILY SRF-like 2 56 IPR036879 GO:0003677|GO:0046983
Vvi13g0703 236 CDD MADS 2 42 - -
Vvi13g0703 236 Gene3D - 1 64 IPR036879 GO:0003677|GO:0046983
Vvi13g0703 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 40 IPR002100 GO:0003677|GO:0046983
Vvi13g0703 236 PANTHER MADS BOX PROTEIN 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0703 Vvi-Chr13 7086198 7086908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0703 2 53 MADS-box Gene Family AT5G10140 51.923 1.21e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi13g0703 SRF-TF 8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0703 - K12412 vvi:109122069 385.571