Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0700 ATGTCAGCCGAGGAAGAGATGGATGCAGCTGCTGAGCAACGGCTCGGAGGTTCTCCACCGGATTTTGATGGGAGGAGTGGCTTTGACTCCCGTACCGGTGTCTACAGTTCACTCATAAAACTTGGGGGCCAGCACCGGGTCCCAACTAGGCCTGACCTTGACACTGCAACCTTCGTGCTGTCACAGTTTCCAGCCCCGGACTGTGCTGAGTCTCGTGTTGCGCTTATAGACTCTGCCACTGGTCGTCGAGTCACGTATGCGGAGCTCCGGCGATCGATCAGGATGCTTGCAACAGGGTTGTATCATGGACTTGGGATTAGAAAGGGTGATGTTGTGTTCCTCTTGGCCCCAAACTCGCTCCTGTATCCAACAATCTGCCTTGCTGTGCTCTCCATTGGCGCGGTGCTGACTACCGCTAACCCACTCAACACTCAGTCAGAAATTTCCAAGCAAGTTGATGACTCAGGTGCCAAAGTTGCTATTTCAGCACCAGAAGAGCTGCACAAGTTGCTCCAAACTGGAGTGCCCACACTCCTCACGCACAGGACTTGTGATGAGAACTCACTTTCCATTGAAGAGTTGATTGACTGCAGCGATCCCGCGCTGGACTTGCCACCAGCCCAGATGAGTCAGTCGGACACCGCAGCCATACTATACTCTTCAGGCACAACTGGGACTAGCAAGGGTGTGATATTAACCCATGCAAAATTCATAGCCATGATGACACTCCTCAAGTGGTCAGTGGATATAACATCATCCAACAATGATGTTTTCTTGTGCTTCATCCCCATGTTCCACATCTACGGGCTTGCATTCTTTGCCCTTGGACTACTCCGTTCAGGAACTACCACTGTCGTGATGCCAAGGTTTGATTCCAAGGCCATGCTTGATGCAATTCAGGCTTACCAAGTGAGCAACATCCCAGCAGTTCCTCCAGTGATTCTTGGACTAGTGAAGAATAGCAGCAGCTGTGACCTATCATCACTAAGAAGGGTGGGTTCAGGGGCTGCACCATTGAGCAAAGAAGTAGCTGAAGGGTTCAGGGAGAAGTTTCCTTGGGTGGAGCTCAGGACAGGCTATGGGTTGACAGAGAGCTGTGGAGCAGCCACTTACTTTGTAACTGATGAGCAAGCCAAGGCCCGTGCAGGCTCAAGCGGAAGATTGCTTCCTAGATTTTGTGCCAAGGTGGTGGATACTGAAACAGGGCTGGCTCTACCACCTAATAGGGAGGGAGAGCTGTGGCTGAAGAGTCCTACTGTGATGAAAGGGTACCTGGGGAATGCAGAAGCAACAGCTGCAACCATCACTTCAGATGGATGGCTGCGAACAGGAGACCTTTGTTATTTTGATGAAGATGGATTCCTTTACATTGTTGATCGGATAAAGGAGCTCATCAAGCACAATGGATATCAGGTGGCTCCAGCAGAATTAGAAGCAATACTTCTGAGTCATCCCAGTGTTCTCGATGCAGCAGTCATACCGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGCCAGGTGGCACCATATAAGAAAGTTAGAAAAGTGGGTTTCATCAATGCCATCCCAAGGTCCACAGCTGGCAAAATCTTGCGGAAGCAGCTCGTCCTTCTAAGCCAACAAGAAGTTATCTCCAAGTTGTAA 1710 0.5012 MSAEEEMDAAAEQRLGGSPPDFDGRSGFDSRTGVYSSLIKLGGQHRVPTRPDLDTATFVLSQFPAPDCAESRVALIDSATGRRVTYAELRRSIRMLATGLYHGLGIRKGDVVFLLAPNSLLYPTICLAVLSIGAVLTTANPLNTQSEISKQVDDSGAKVAISAPEELHKLLQTGVPTLLTHRTCDENSLSIEELIDCSDPALDLPPAQMSQSDTAAILYSSGTTGTSKGVILTHAKFIAMMTLLKWSVDITSSNNDVFLCFIPMFHIYGLAFFALGLLRSGTTTVVMPRFDSKAMLDAIQAYQVSNIPAVPPVILGLVKNSSSCDLSSLRRVGSGAAPLSKEVAEGFREKFPWVELRTGYGLTESCGAATYFVTDEQAKARAGSSGRLLPRFCAKVVDTETGLALPPNREGELWLKSPTVMKGYLGNAEATAATITSDGWLRTGDLCYFDEDGFLYIVDRIKELIKHNGYQVAPAELEAILLSHPSVLDAAVIPVEDEAAGQIPMAYVVRAGGSELTQQEVIQFVAGQVAPYKKVRKVGFINAIPRSTAGKILRKQLVLLSQQEVISKL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0700 569 ProSitePatterns Putative AMP-binding domain signature. 217 228 IPR020845 -
Vvi13g0700 569 Gene3D - 463 566 IPR045851 -
Vvi13g0700 569 Pfam AMP-binding enzyme 71 466 IPR000873 -
Vvi13g0700 569 FunFam 4-coumarate--CoA ligase 2 463 564 - -
Vvi13g0700 569 Gene3D - 47 462 IPR042099 -
Vvi13g0700 569 CDD 4CL 47 557 - -
Vvi13g0700 569 SUPERFAMILY Acetyl-CoA synthetase-like 71 558 - -
Vvi13g0700 569 MobiDBLite consensus disorder prediction 1 23 - -
Vvi13g0700 569 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 48 558 - -
Vvi13g0700 569 Pfam AMP-binding enzyme C-terminal domain 476 551 IPR025110 -
Vvi13g0700 569 FunFam Long-chain-fatty-acid--CoA ligase FadD 45 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0700 Vvi-Chr13 7073094 7075034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0700 25 569 Monolignol Biosynthesis Gene Families AT4G05160 45.504 5.52e-164 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0700 K10526 - vvi:100256391 1110.52