Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0697 ATGGAGTGGTATTTCTTCAGTGCCCTAGATAGGAAGTACGGTAACGGGGGAAGGGTGAATAGAGCCACCAGCTACGGCTACTGGAAGGCGACTGGTAATGACCGCTCGGTGCTCCATGGCTCGAGAATTGTCGGGATGAAGAAGACCCTTGTATTTCACAGTGGCCGTGCTCCGGGTGGCCAGCGGACCAATTGGATAATGCATGAGTACAGGCTTGTGGATGATGAATTGGTGAAAGCCTTGCGGGATTCATACGTGGTGTGTAGAGTTTTTCTTAAGAGTGAAATAGGTCCTCCCCACAAAGACCGTTATGCCCCCTTTATTGAGGAGGAATGGGATGATGACAAGACAGGCTCGTCTCAGGGAGGAAAATCTGTAGATGAAGCTATAGTTGATAGCAAGGCATGTATTGAAGAGAGTGATCTTGAGCAGGATGCTCAATCCACTACACTTAGGCAAAGTGAGCATCTAAAAAACTCTGGAAGTGTTTTATCTCTTTCCCCGAGTGAGAGGTTGGAGGATTGCCCCTTGACATGTACTGTTAATAAAGAGTCGACGATTTTTCCTAATAAAAGATCAAGGCATGATGATCTGAATCCTCAACATTCAGATGCTTCAGAAAGCTCACTGATGACCATTCAAGAATGTACAATAACAAAAAAAAGTTCTCCACCTTCTATCTTTGGATTTCCCCTTGTGGAACTTAATGGGAAGAAAGAATGTCAAATTAAAAAGGAACTTCCTACAGCTCCGTCCGGTACATTTGTGGAACTTAATGGGAAGAAAGAGAGCCAAATCAAAAAGGAAATTTCTACAGCTCCTCACTCTGCTACAGTGGTGGAACTTAAGGGGATGAAAGAAAGTGAGATAAAAAACGAAGTTTCTAGAACTCCCCCAGCCACGTTTGATATCAGTGATGGTAATGCAACTTTGCCTCCCAGCTATTTGAAGTATATTACTTACTTGGAAGATAAGGTCCGTGAAATGTCTGCTGAGAGGGAAAGATTGAAAGCTGATATGATGCAGGCCGAGTCCATTGTTAATGCTTACAAATCTCGAATTGATATAACCCTAAACAACGGAAATGAGGACTGA 1095 0.4356 MEWYFFSALDRKYGNGGRVNRATSYGYWKATGNDRSVLHGSRIVGMKKTLVFHSGRAPGGQRTNWIMHEYRLVDDELVKALRDSYVVCRVFLKSEIGPPHKDRYAPFIEEEWDDDKTGSSQGGKSVDEAIVDSKACIEESDLEQDAQSTTLRQSEHLKNSGSVLSLSPSERLEDCPLTCTVNKESTIFPNKRSRHDDLNPQHSDASESSLMTIQECTITKKSSPPSIFGFPLVELNGKKECQIKKELPTAPSGTFVELNGKKESQIKKEISTAPHSATVVELKGMKESEIKNEVSRTPPATFDISDGNATLPPSYLKYITYLEDKVREMSAERERLKADMMQAESIVNAYKSRIDITLNNGNED* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0697 364 Coils Coil 319 353 - -
Vvi13g0697 364 ProSiteProfiles NAC domain profile. 1 93 IPR003441 GO:0003677|GO:0006355
Vvi13g0697 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 190 - -
Vvi13g0697 364 Pfam No apical meristem (NAM) protein 2 72 IPR003441 GO:0003677|GO:0006355
Vvi13g0697 364 SUPERFAMILY NAC domain 2 93 IPR036093 GO:0003677|GO:0006355
Vvi13g0697 364 Gene3D NAC domain 1 96 IPR036093 GO:0003677|GO:0006355
Vvi13g0697 364 MobiDBLite consensus disorder prediction 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0697 Vvi-Chr13 7051662 7054131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0697 2 114 NAC Transcription Factor Family AT3G10480 67.241 1.48e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi13g0697 NAM 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0697 - - vvi:100265122 735.717