Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0695 ATGGGGAGGAACAACAACAGCGACAGCGAAGAAGACGAAACCCTGTACTACCGCTATGCCTCCTCCTCAATTCCTAACCCTAACCCTAAATCTAACTCCTCCAAACTCCAGAAAAGATCCAGCGGTTCCGGAAGTCTAGCTCCTTCTAAATCAACGGTCTACGTCTCCAACCTCGACTACACCCTTACCAACTCCGACCTCTTCACCATCTTCTCCACCTTCGGCAAAGTCGCCAAGGTCACCATCCTAAAGGATCGCCACACTCGCCACAGCCGCGGCGTCGCCTTCGTACTCTTCGTCTCCCGTGACGAGGCCATCGCGGCCGCTCGTGAGATGAACGGCAAGGTCCTCAATAAACGCACCCTCACCGCCTCTATAGCCGCCGACAACGGTCGGGCCGCTGAGTTCATTCGCCGCAGGGTTTACAAGGACAAGAGCCGCTGTTACGAGTGCGGAGAGGGTGGCCATTTGTCGTACGAGTGCCCCAGGAACCAGTTGGGCCCCAGGGAGCGTCCGGTGCCGAAGCGCTCACGGCGCGGGCAGGGCGGGAGTGAGGCCAGGCAGAACGGTGATCACGACAACGGCGGATCGGATGGCGGGGAAGCATTTGAGGATGATAATTGGGCGTCAGTGGTCGATACTGGTGCTGATCAGAGGTTATTAAAGGGAAGTGAGGGTTTGGAGATGAGGAAGAAGGGGAAGAAAGAGAAAAAAGCAAGTTATTTTAGTGATGAGAGTGACGAGGAGGAGTAA 753 0.5591 MGRNNNSDSEEDETLYYRYASSSIPNPNPKSNSSKLQKRSSGSGSLAPSKSTVYVSNLDYTLTNSDLFTIFSTFGKVAKVTILKDRHTRHSRGVAFVLFVSRDEAIAAAREMNGKVLNKRTLTASIAADNGRAAEFIRRRVYKDKSRCYECGEGGHLSYECPRNQLGPRERPVPKRSRRGQGGSEARQNGDHDNGGSDGGEAFEDDNWASVVDTGADQRLLKGSEGLEMRKKGKKEKKASYFSDESDEEE* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0695 250 SUPERFAMILY Retrovirus zinc finger-like domains 137 164 IPR036875 GO:0003676|GO:0008270
Vvi13g0695 250 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vvi13g0695 250 MobiDBLite consensus disorder prediction 19 49 - -
Vvi13g0695 250 MobiDBLite consensus disorder prediction 159 250 - -
Vvi13g0695 250 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Vvi13g0695 250 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 135 - -
Vvi13g0695 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vvi13g0695 250 CDD RRM_ZCRB1 50 125 IPR034219 -
Vvi13g0695 250 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 249 IPR044598 GO:0000398|GO:0005689
Vvi13g0695 250 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Vvi13g0695 250 Gene3D - 138 173 - -
Vvi13g0695 250 SMART rrm2_1 52 125 IPR003954 GO:0003676
Vvi13g0695 250 SUPERFAMILY RNA-binding domain, RBD 26 133 IPR035979 GO:0003676
Vvi13g0695 250 FunFam Zinc finger CCHC-type and RNA-binding motif-containing protein 1 137 182 - -
Vvi13g0695 250 MobiDBLite consensus disorder prediction 223 244 - -
Vvi13g0695 250 Gene3D - 1 135 IPR012677 -
Vvi13g0695 250 ProSiteProfiles Zinc finger CCHC-type profile. 147 163 IPR001878 GO:0003676|GO:0008270
Vvi13g0695 250 MobiDBLite consensus disorder prediction 169 199 - -
Vvi13g0695 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0695 Vvi-Chr13 7042412 7043164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0695 37 157 Eukaryotic Initiation Factors Gene Family AT1G71770 29.752 3.04e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0695 K13154 - vvi:100251234 483.796