Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0691 ATGGAAGCTCAAGACGAATACGCTCATATTGTTAAGGGAAAGCGCACCAAGCGTCTCAGGCCCCACTCTCCCCTCCCTTTTCCCATCCCTACTAATTCTTCCACCGCTGAGGGAGGTGATAGCAGTGGTGGCGATGATTCTAATCTTATGCATATCATCACCAACTCCAATTCCGCCTCATCTCCTGCCAATTCCTTTGACTTGTTTCAACAAGACAGCTCCGAGGAGGATGAGGACTTGGCCAATTGCCTGATTCTCCTGGCTCAAGGTCAATCACGGGAGGAATCCAAGGTGGAAGACGGAGGTGGAAGTGTGGCAGCCGCCGCCACTGCCACGGCAAAGGCGGGTTTCTACGCCTATGAGTGCAAGACTTGCAACCGGACTTTCCCGTCGTTCCAGGCGCTGGGAGGGCACAGGGCGAGTCACAAGAAGCCCAAGGCGTTCATGGAAGAGAAAAAGATTTTCGGGTTTTTGGAGGAGGAAGAATCGCAGTTGAAGCCTCTCACACTACAATTGAGCAGCAGAGCTTTTAACAGCAGCAGCAGCAAGTCAAGGATCCACGAGTGCTCCATCTGCGGGGCGGAGTTCACGTCGGGGCAGGCCTTGGGAGGGCACATGAGGCGGCACAGAGCCCCCATCCCCATCCCCTCCACCAACACAACCCTCTCCCTAAACCCACTCCCTGGCTGCTTGGAGCCTGAGCAAGCCAAGAGGCCAAGAACTCTACTCTCACTGGATTTGGATCTCAACCTTCCAGCTCCGGAGGACGACCACAACCATCCTCGGGAACCCAAATTCTCCTTCACGCCCAAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCCATCACCTCTCATGTTCCCGGCCCCCACTTTGGTGGATTGTCATTACTAA 909 0.5479 MEAQDEYAHIVKGKRTKRLRPHSPLPFPIPTNSSTAEGGDSSGGDDSNLMHIITNSNSASSPANSFDLFQQDSSEEDEDLANCLILLAQGQSREESKVEDGGGSVAAAATATAKAGFYAYECKTCNRTFPSFQALGGHRASHKKPKAFMEEKKIFGFLEEEESQLKPLTLQLSSRAFNSSSSKSRIHECSICGAEFTSGQALGGHMRRHRAPIPIPSTNTTLSLNPLPGCLEPEQAKRPRTLLSLDLDLNLPAPEDDHNHPREPKFSFTPKQQQQQQQQQQQQQQQPSPLMFPAPTLVDCHY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0691 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Vvi13g0691 302 Gene3D Classic Zinc Finger 118 209 - -
Vvi13g0691 302 SUPERFAMILY beta-beta-alpha zinc fingers 120 209 IPR036236 -
Vvi13g0691 302 MobiDBLite consensus disorder prediction 202 233 - -
Vvi13g0691 302 MobiDBLite consensus disorder prediction 1 64 - -
Vvi13g0691 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Vvi13g0691 302 SMART c2h2final6 187 209 IPR013087 -
Vvi13g0691 302 SMART c2h2final6 120 142 IPR013087 -
Vvi13g0691 302 MobiDBLite consensus disorder prediction 29 64 - -
Vvi13g0691 302 MobiDBLite consensus disorder prediction 266 291 - -
Vvi13g0691 302 MobiDBLite consensus disorder prediction 250 302 - -
Vvi13g0691 302 Pfam C2H2-type zinc finger 119 145 - -
Vvi13g0691 302 Pfam C2H2-type zinc finger 187 212 - -
Vvi13g0691 302 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Vvi13g0691 302 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Vvi13g0691 302 PANTHER ZINC FINGER PROTEIN ZAT5 59 278 - -
Vvi13g0691 302 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0691 Vvi-Chr13 7002863 7003771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0691 2 302 C2H2 Transcription Factor Family AT5G04390 41.389 6.20e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi13g0691 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0691 - - vvi:100254652 553.132