Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0678 ATGGTGGTTGCCGGAAATGCTGCCGGAGGGGGTGGTTGGGCTGACACGAGGAGCCTATCCGTCCATGTCATCACCGGTCGGTGGTTCATGGTGTTTGCATCATTTCTGATCATGTCGGCCGCCGGTGCAACCTACATGTTCGGTCTCTACTCAAGCACACTCAAATCCGTTCTGGGATATGATCAAACCACCCTGAATTTGCTCAGCTTTTTCAAGGACTTGGGAGCAAACGTTGGGGTCCTTTCAGGCCTCATCAACGAGGTCACACCCCCATGGGTTGTGCTATCAATAGGAGCAGCAATGAATTTTTTTGGCTACTTCATGATATGGCTTGCCGTCTCTCACAAAATAGCCAAGCCCCAGGTGTGGCACATGTGTCTCTACATATGCATCGGTGCAAATTCCCAGGCTTTCGCTAACACCGGATCTCTGGTGACCTGCGTTAAGAACTTCCCGGAGAGCCGAGGCGTGGTGTTGGGGATACTGAAGGGGTATGTTGGGCTGAGTGGTGCAATCATCACACAGCTCTACCATGCCTTCTATGGCAATGATACCAAGGCTCTTATTTTGCTCATAGGTTGGCTGCCTGCTGCTATATCTTTTGCATTTCTTCGGACCATTCGAATCATGAAGGTGATTCGACAGGAGAGCGAGCGCAAAGTTTTCTACAAGTTTCTTTACATCTCTCTTGGCCTCGCCGGGTTTCTCATGATTATAATTATAGTTGAGAAACAGATGACTTTTTCTCAGAGTGGGTACTGGGGAAGCGCCGCTTTAGTTCTTCTCTTGCTCTTTCTCCCGCTCGCTGTTGTTATTCAAGAGGAATTCAAGCTCTGGAAGATCAGGCAACAGGCCCTGAGTGAGCCTCCACTGTTGAAAATCATCGCCGGGAATTTGAACACTGAGGCTTCTTCATCTTCACTACCGCCTGAATCAGCAGCTGCAACAAGTTCTCTCCCCGAACAACTAAGCTCACAGAAGGAAGTTTCTTGCTTCTCCAACGTGTTCAGGCCACCGGACAGAGGAGAGGACTACACCATACTTCAAGCCCTTTTCAGCATAGACATGTTTGTTCTATTCTTCACTACAATTTGTGGTGTTGGGGGGACTTTAACAGCCATAGACAACTTGGGACAGATTGGGAGTTCACTGGGGTACCCCCATAAAAGCCTGAACACTTTCATATCGCTGGTTAGCATATGGAACTATCTTGGAAGAGTGACTGCAGGCTTTGGATCGGAGATCGTCTTAGACAAGTACAAATTCCCCCGCCCTTTGATGCTCACACTCATCCTCCTCCTCTCATGTGTTGGTCATCTCCTCATCGCCTTCAACATCAAGAATGGTCTCTACTTTGCATCAATAATTATCGGGTTTTGCTTCGGTGCTCAATGGCCAATACTTTACGCAGTCATATCTGAAATTTTTGGCCTCAAATACTACTCCACGTTGTACAATTTTGGCGCAGTGGCTAGCCCAATCGGTTCCTATTTATTCAATGTGATGGTGGCCGGATATCTCTATGATAAAGAGGGAAAAAGACAAATGGCAGCCCTGGGGATTGAAAGAAAGCCTGGTGAGGACTTGGACTGCACAGGCGTAGAGTGCTTCAAATTGTCCTTCATTATAATCACAGCGGCCACACTTTTCGGTTCACTTGTATCGCTCATACTAGTGCTTCGGACCAGAAAGTTCTACAAGGGTGACATTTACAAGAAGTTCCGGGAACAAGCCAAAGCAGCCGAGACTGAGATGGCCCAGGCCGAGAATCGGGCTGCCCCATCGCTGGCAAAAGGAAAAAAAGAATCCAATGCATCAGTACTGGTCTCCTAA 1833 0.4806 MVVAGNAAGGGGWADTRSLSVHVITGRWFMVFASFLIMSAAGATYMFGLYSSTLKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAAMNFFGYFMIWLAVSHKIAKPQVWHMCLYICIGANSQAFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYHAFYGNDTKALILLIGWLPAAISFAFLRTIRIMKVIRQESERKVFYKFLYISLGLAGFLMIIIIVEKQMTFSQSGYWGSAALVLLLLFLPLAVVIQEEFKLWKIRQQALSEPPLLKIIAGNLNTEASSSSLPPESAAATSSLPEQLSSQKEVSCFSNVFRPPDRGEDYTILQALFSIDMFVLFFTTICGVGGTLTAIDNLGQIGSSLGYPHKSLNTFISLVSIWNYLGRVTAGFGSEIVLDKYKFPRPLMLTLILLLSCVGHLLIAFNIKNGLYFASIIIGFCFGAQWPILYAVISEIFGLKYYSTLYNFGAVASPIGSYLFNVMVAGYLYDKEGKRQMAALGIERKPGEDLDCTGVECFKLSFIIITAATLFGSLVSLILVLRTRKFYKGDIYKKFREQAKAAETEMAQAENRAAPSLAKGKKESNASVLVS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0678 610 SUPERFAMILY MFS general substrate transporter 28 272 IPR036259 -
Vvi13g0678 610 SUPERFAMILY MFS general substrate transporter 230 565 IPR036259 -
Vvi13g0678 610 CDD MFS_Mch1p_like 26 551 - -
Vvi13g0678 610 Gene3D MFS general substrate transporter like domains 334 566 IPR036259 -
Vvi13g0678 610 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 28 571 - -
Vvi13g0678 610 FunFam Nodulin family protein 347 568 - -
Vvi13g0678 610 Pfam Nodulin-like 27 272 IPR010658 -
Vvi13g0678 610 Coils Coil 571 591 - -
Vvi13g0678 610 MobiDBLite consensus disorder prediction 585 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0678 Vvi-Chr13 6787891 6794688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0678 7 577 Nodulin-like Gene Family AT2G39210 70.403 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0678 - - vvi:100246181 1147.88