Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0675 ATGGTGGGTGAGGGTGGAGGCTGGGCTAATGACATGAGGAGCCTAACCCTGCAAATCCTGACAGGGCGGTGGTTCATGGTGTTTGCCACATTTCTCATCTTGTCCGCTTCTGGTGCAACCTACATGTTCGGCCTCTACTCCAGCACAATCAAATCAACTCTGGGCTATGATCAAACCACCCTCAATTTGATCAGCTTTTGCAAGGACTTGGGAGCCAACGTTGGAGTCCTTGCAGGCCTCATCAACGAGGTCACTCCAACATGGTGTCTGGAAAAATACTCAAACCCCATGTCTGGCACATGTGCCTCTACATATGTATCGGTGCCAATTCAGTCTTTCTCCAACACCGGAGCCCTGGTCACCTGCGTTAAGAACTTCCCAGAGAGCAGAGGCGTGGTGCTGGGGATCTTGAAGGGGTATCAAGGGCTGAGCAGTGCGATTATCACGCAGATATACCATGCTCTTTATGGCAATCACATTAAGGCTCTCATTTTGCTCATAGCTTGGCTTCCTGCAGCTTTGTCTTTTGCGTTTCTCAGGACTATTCAAATCATGAAGCTCAGTCTGCAGAAGGAGGAGCACAATGTCTTCTACCATTTCCTCTATATCTCTCTTGGCCTGGCTGGGTTTCTCATGATTATAATTATAGTTGAGAAACAGGTGAATTTTACGCAGATTGAGTTCCGTGGAAGCGGGGCTGCGGTCCTTTTCTTGCTCTTTCTCCAACTTGCTGTTGTTATAAAAGAGGAATTCAATCTTTGGAAGTTCAAGCAACAGGCCCTGAATCCAGACACCGAGATTTCTCGGTTGCCCCCACCATCGCTGCCCGAGTCCACAGCTGCAGAAAGCTCACAGAAGCAAGTTTCTTGCCTATCAAACGTGTTCCACCCACCGGAGAGAGAGGGAGATTACACCATACCTCAAGCCCTTTTCAGCATCGACTTGTTGATTCTGGTCTTAGCTTCAATCTGCGGTCTGGGAGGGAGTTTAACAGTAGTAGACAACTTGGGACAGATCGGAACTTCTCTGGGGTACCCCACTCGAAGCCTAAGCACCTTCATATCACTCCTCAGCATATGGAACTATCTAGGAAGAGTAGCTGCTGGTTCCATATCAGAAACCCTCCTGACCAAGTACAAATTCCCTCGGCCTTTGATGCTCACTCTCATCGTACTCCTCTCATGTGTTGGCCATCTCCTCATCGCCTTCAACATCAAGAACTCTCTCTATGTAGCTTCCGTAATCATCGGCTTCTGTTTTGGTGCCCAATGGGCATTACTCTACGCCATCATATCTGAAATATTTGGCCTTAAACACTACTCCACGTTCTTCAATTTTGCTGGGGTGGCCAGCCCAATTGGTTCTTATCTGCTCAATGTGAGGGTGGCAGGACATCTATATGATAAAGAGGCGAAAAGGCAAATGGCAGCTCTGGGGATCCAGAGGAAGCCTGGTGAGGAATTGAACTGCAGTGGTGTGGAGTGCTTCAAATTGGCTTTCATTATAATCACAGGGGTCACCATTTTTGGTTCTCTGGTTTCATTCATGCTAGTGATTAGGACTAGGAGGTTTTACCAGACTGACATTTACAAGAAGTTCCGGGAGGAGGCCAAAGCCGATGAGGCCAAGACGGTGACAGTCACTAATGGTTAG 1653 0.4809 MVGEGGGWANDMRSLTLQILTGRWFMVFATFLILSASGATYMFGLYSSTIKSTLGYDQTTLNLISFCKDLGANVGVLAGLINEVTPTWCLEKYSNPMSGTCASTYVSVPIQSFSNTGALVTCVKNFPESRGVVLGILKGYQGLSSAIITQIYHALYGNHIKALILLIAWLPAALSFAFLRTIQIMKLSLQKEEHNVFYHFLYISLGLAGFLMIIIIVEKQVNFTQIEFRGSGAAVLFLLFLQLAVVIKEEFNLWKFKQQALNPDTEISRLPPPSLPESTAAESSQKQVSCLSNVFHPPEREGDYTIPQALFSIDLLILVLASICGLGGSLTVVDNLGQIGTSLGYPTRSLSTFISLLSIWNYLGRVAAGSISETLLTKYKFPRPLMLTLIVLLSCVGHLLIAFNIKNSLYVASVIIGFCFGAQWALLYAIISEIFGLKHYSTFFNFAGVASPIGSYLLNVRVAGHLYDKEAKRQMAALGIQRKPGEELNCSGVECFKLAFIIITGVTIFGSLVSFMLVIRTRRFYQTDIYKKFREEAKADEAKTVTVTNG* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0675 550 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 24 528 - -
Vvi13g0675 550 Gene3D MFS general substrate transporter like domains 309 526 IPR036259 -
Vvi13g0675 550 Pfam Nodulin-like 99 247 IPR010658 -
Vvi13g0675 550 Pfam Nodulin-like 23 90 IPR010658 -
Vvi13g0675 550 MobiDBLite consensus disorder prediction 265 284 - -
Vvi13g0675 550 SUPERFAMILY MFS general substrate transporter 23 523 IPR036259 -
Vvi13g0675 550 Pfam Major Facilitator Superfamily 338 521 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0675 Vvi-Chr13 6684546 6686259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0675 12 536 Nodulin-like Gene Family AT2G39210 63.555 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0675 - - vvi:100266758 748.814