Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0667 ATGCTTCGTAACACCCACATTGTCTTTATATGCCTTCTGGGCTGCCTCTGCCCCGTTATAACAGCCACTGATCTCCCCCATCAACACCCCAATCCTGAAGCTGTGGTTCTACAAGTTCAAAGGAGACTGAATGCGTCTCTTGCAAGGAGGGGCTTACTGGGTGTCCATGAAAATGACCAGGTTTCATGTCTCACCGGCAACCCCATCGATGACTGTTGGAGGTGCGACCCCAATTGGGAGGCTGATCGCCAACATCTGGCCGAATGTGGGATTGGGTTCGGTCAGCAAGCAGTTGGTGGCAAAGGTGGTCAAGTCTATGTGGTCACTGACCACTCCGACTCAGGGAATCCGGGTTCGCTCCGATACGCTGTCACCAAACCCGAGCCACTTTGGATTATTTTCTCCAGTGATATGCTGATAAAACTCAAGAGAGAGCTTATAGTAAACAGCTACAAGACTATCGATGGACGAGGCGCAAATGTTCAAATCACGGGCGGTGGCTGCATTGGCCTCAAATACGTTACAAATGTTATCATACACAACATTCAGCTTCATCATTGTGTCCCCTCGGAATCGGACGGTGATGGGATATCCATCATGGGGTCAAGGTACATCTGGATAGACCACTGCTCCCTCTCCTATTGCAAGGATGGCCTGATCGATGCCACATTGGGTTCCACCGCCATCACCCTATCAAACAACTACTTCTCGCATCATGACAAAGTGATGCTCCTGGGTCGAAGCGACGGCGACGAGATGGATGATGGGATGCAAGTGACGGTGGCCTTCAATCGCTTCGGTGAGGCGCTGGAGCAGAGGATGCCAAGGTGCCGGCGGGGGTACTTCCACGTGGTGAATAACGATTACACGCAATGGGGGATTTATGCCATTGGCGGCAGCGCAAGCCCTACTATTAATAGCCAAGGCAACCGTTACACAGCACCACCGTCCACAAATGCCAAGGAGGTGACGAGGCGTATGGATGCAAAAGATGGAGATTGGGCACGTTGGAATTGGAGAACAGAGGGAGACATAATGGTCAACGGCGCATACTTTGTGCCCTCTGGCGATGGTTTGGGTGCTCAGTTTGCTATGGCTTCTAGCGTGGAGCCCAAATCTGCAGGCTTCATTGATCAACTCACCATGAATGCCGGTGCCCTTCCTCCCACCAGTGTAGTTGGAAGCATACCAAATGGTCAAGTACCCAATAGCATACCGAATAGTCAAGTACCCAATGGCGTACCAAATGATCCAGTACCCAATGTTGGCGGAACTAACGGGGATAATGGTGGTCTAGGGTCCTACAGTGGTGGTGCTGGGGCTAATTCCGGTTATGCTGGTGGTGGTGCTGCTTCTGGGTCCAATTATGGTGATGGTGGTGGTGCTGCTGCTGCTGGGGCTAATCCCGGTTATGCTGGTGGTGGTGCTGCTTCTGGGTCCAATTATGGTGATGGTGGTGGTGCTGCTGCTTCTGGGTCCAATTATGGTGATTGGAATTTCTTTGGAATGACACATGGGAGCGGTGCACCGCGGCTGCCACCTCCATCAACCACCTCCGTTCTTTCAGCTCCTTTTGTTACTTTATTCCTGTACTTTATTATCAACTATGGTTGTTGTATATTACCATTGTAA 1632 0.5116 MLRNTHIVFICLLGCLCPVITATDLPHQHPNPEAVVLQVQRRLNASLARRGLLGVHENDQVSCLTGNPIDDCWRCDPNWEADRQHLAECGIGFGQQAVGGKGGQVYVVTDHSDSGNPGSLRYAVTKPEPLWIIFSSDMLIKLKRELIVNSYKTIDGRGANVQITGGGCIGLKYVTNVIIHNIQLHHCVPSESDGDGISIMGSRYIWIDHCSLSYCKDGLIDATLGSTAITLSNNYFSHHDKVMLLGRSDGDEMDDGMQVTVAFNRFGEALEQRMPRCRRGYFHVVNNDYTQWGIYAIGGSASPTINSQGNRYTAPPSTNAKEVTRRMDAKDGDWARWNWRTEGDIMVNGAYFVPSGDGLGAQFAMASSVEPKSAGFIDQLTMNAGALPPTSVVGSIPNGQVPNSIPNSQVPNGVPNDPVPNVGGTNGDNGGLGSYSGGAGANSGYAGGGAASGSNYGDGGGAAAAGANPGYAGGGAASGSNYGDGGGAAASGSNYGDWNFFGMTHGSGAPRLPPPSTTSVLSAPFVTLFLYFIINYGCCILPL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0667 543 PANTHER PECTATE LYASE 18-RELATED 27 388 IPR045032 GO:0030570
Vvi13g0667 543 Gene3D - 66 388 IPR012334 -
Vvi13g0667 543 MobiDBLite consensus disorder prediction 394 415 - -
Vvi13g0667 543 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Vvi13g0667 543 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Vvi13g0667 543 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Vvi13g0667 543 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Vvi13g0667 543 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Vvi13g0667 543 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vvi13g0667 543 Pfam Pectate lyase 143 310 IPR002022 -
Vvi13g0667 543 SMART amb_all 137 318 IPR002022 -
Vvi13g0667 543 MobiDBLite consensus disorder prediction 394 430 - -
Vvi13g0667 543 SUPERFAMILY Pectin lyase-like 88 388 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0667 Vvi-Chr13 6593309 6595211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0667 25 387 Polysaccharide Lyase AT3G54920 61.097 1.11e-171 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0667 K01728 - vvi:100251231 936.021