Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0653 ATGAGTCCGACGAAGGATTCGAATAAAATATCAGTACTGAATCAACTACTTGCGGTCGTGAAGGAGATTTCTGGGTTACCCGAGTGTAGAAACACCACCAAGAAGATGTATTACAATTTGGTGAGGAGGGTCAAGCTTTTGAGTCCTCTGTTTGAGGAATTGAAGGACAGCGAAGAGGAGCTCGAGGACAGCGAGATTCGAGCCTTTGAGTTGCTGAGAGTTGCTCTCGATTCCGCTATGGACCTTCTCAAATTGGTCAACGAAGGGAGTAAGCTTTATCAGGCTCTGCAAAGGGACAAAATTGCAGATAAGTTTTGCCAAATGACAGATCAAATTGAAGCGTCGTTGAGCAGTATTCCTTATGATAAACTCAATGTATCAGAGGAAGTTCAAGAACAGATTGAGCTTGTTCATGCTCAATTCAAAAGAGCGAAGGGAAGAACAGACTCACCTGATTTACAACTAGATAGGGATTTAGAAATAGCACAGAAAGAAAAAGACCCTGATCCTGAAATTCTAAGAAGACTATCCGAAAACCTGCAACTCAGGACTATCAATGATTTGAAGAAAGAATCTCTGGCTTTGCATGAAATGGTTATCTCAAGTTCTGTAGATCCAGGGGACTGCTTTGCAAAGATGTCATCTCTGCTTAGAAAGCTCAAGGATTATGTATTAACAATAAACCCTGAAGCAGACACATCAGAGGGTGAAAAGGGCTTCATCAAGCACAGATCTCCTGTTATCCCAGATGATTTCCGGTGCCCAATCTCTCTTGAACTGATGAGAGATCCTGTTATAGTCTCTACTGGACAGACATATGAAAGATCCTGCATTCAAAAATGGCTGGATGCAGGGCACAAGACCTGTCCTAAGACGCAGCAGACTCTGTTGCACACTGCCTTAACACCCAACTATGTTTTGAAGAGTTTAATTGCTTTATGGTGTGAGAGCAATGGCATTGAGCTCCCAAAAAATCAAGATAATTGTAGAAACAAGAAGACCGGAAAATTTGTTTCAGACTGTGATAGACCCGCTATTCATGCCTTATTGCAGAAACTACTTGACGGGAATCCAGAAATACAAAGAGCAGCAGCTGGTGAGCTCCGGTTGCTGGCAAAGAGGAATGCAGATAACAGAGTATGCATTGCTGAGGCAGGAGCCATTCCTCGGCTTGTAGAACTACTATCCTCCACAGATCCCCGGACCCAAGAGCATGCTGTTACAGCACTTCTCAACCTCTCCATAAATGAGGCTAACAAGGGAAGTATTGTAATATCAGGAGCTATTCCAGATATAGTGGACGTTCTAAAAACTGGCAGCATGGAAGCAAGAGAAAATGCTGCTGCAACCCTTTTCAGTTTATCGGTCATAGATGAGAACAAGGTGATAATAGGAGCGGCTGGGGCTATCCCAGCTCTTATTGATCTGCTTTGTCAGGGAACCCCAAGAGGAAAGAAGGATGCTGCCACTGCTATTTTTAACCTTGCTATCTATCAGGGAAACAAGGTGAGGGCTGTAAGGGCAGGGATTGTGGTGCCACTGATGAGATTCCTGAAGGATGCTGGGGGTGGAATGGTGGATGAAGCACTGGCAATACTGGCTATTCTTGCCAGCCATCAAGAGGGAAAATTGGCTATTGGCCAGGCTGAGCCCTTCCCTGTTTTGGTGGAAGTGATAAAGACAGGTTCGCCTCGTAATAGGGAGAATGCTGCAGCCGTTTTGTGGTCGTTGTGTACAGGTGATGCACAGCATTTGAAAATAGCAAGAGAGCTTGGGGCAGAAGAGGCATTGAAGGAGCTTTCAGAGAATGGCACTGATAGGGCCAAGAGAAAAGCTGGGAATATTTTAGAGCTTCTTCAACGAGTTGAAGTTGTGGTCGACCCCTAA 1887 0.4462 MSPTKDSNKISVLNQLLAVVKEISGLPECRNTTKKMYYNLVRRVKLLSPLFEELKDSEEELEDSEIRAFELLRVALDSAMDLLKLVNEGSKLYQALQRDKIADKFCQMTDQIEASLSSIPYDKLNVSEEVQEQIELVHAQFKRAKGRTDSPDLQLDRDLEIAQKEKDPDPEILRRLSENLQLRTINDLKKESLALHEMVISSSVDPGDCFAKMSSLLRKLKDYVLTINPEADTSEGEKGFIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGIELPKNQDNCRNKKTGKFVSDCDRPAIHALLQKLLDGNPEIQRAAAGELRLLAKRNADNRVCIAEAGAIPRLVELLSSTDPRTQEHAVTALLNLSINEANKGSIVISGAIPDIVDVLKTGSMEARENAAATLFSLSVIDENKVIIGAAGAIPALIDLLCQGTPRGKKDAATAIFNLAIYQGNKVRAVRAGIVVPLMRFLKDAGGGMVDEALAILAILASHQEGKLAIGQAEPFPVLVEVIKTGSPRNRENAAAVLWSLCTGDAQHLKIARELGAEEALKELSENGTDRAKRKAGNILELLQRVEVVVDP* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0653 628 Gene3D - 326 624 IPR011989 -
Vvi13g0653 628 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Vvi13g0653 628 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Vvi13g0653 628 Gene3D - 7 120 IPR036537 GO:0007166
Vvi13g0653 628 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Vvi13g0653 628 FunFam RING-type E3 ubiquitin transferase 331 625 - -
Vvi13g0653 628 PANTHER U BOX DOMAIN-CONTAINING 34 619 - -
Vvi13g0653 628 SMART arm_5 375 415 IPR000225 GO:0005515
Vvi13g0653 628 SMART arm_5 416 456 IPR000225 GO:0005515
Vvi13g0653 628 SMART arm_5 539 579 IPR000225 GO:0005515
Vvi13g0653 628 SMART arm_5 457 497 IPR000225 GO:0005515
Vvi13g0653 628 SMART arm_5 330 373 IPR000225 GO:0005515
Vvi13g0653 628 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Vvi13g0653 628 CDD RING-Ubox_PUB 249 301 IPR045210 -
Vvi13g0653 628 FunFam RING-type E3 ubiquitin transferase 248 321 - -
Vvi13g0653 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 321 IPR013083 -
Vvi13g0653 628 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Vvi13g0653 628 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Vvi13g0653 628 SUPERFAMILY RING/U-box 247 323 - -
Vvi13g0653 628 SUPERFAMILY ARM repeat 342 619 IPR016024 -
Vvi13g0653 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Vvi13g0653 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 468 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0653 Vvi-Chr13 6301357 6304714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0653 12 625 U-box Gene Family AT3G54850 67.967 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0653 - - vvi:100265038 1204.5