Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0644 ATGACGTGTTTTCCTTTTCATAAGGGAGAGAAAAATGATGAACCCAAGGCTACAAAGTCTACTTCGGTGCGTTCTTCCACTTCCATTTCCATGTCCACTGATCATGAGGTGAGGAGATCTGGGTCTGAATTCAATTCTCAAAATGCATCAGACATCAGCACTGAATCCTCTGCGAAGACCTCATTTACTAGTTTGCAACAAAGACCCAGCAATCTCAAAGTATTCACCTTCTCTGAGCTAAAGTCAGCTACAAAGAATTTCAGCCGCTCTCTTATGATTGGTGAGGGTGGATTTGGTGGTGTATATAGGGGTGTGATTCGAAGTACAGAGGATCCACATAAGAAAATTGATATTGCTGTAAAGCAACTAAGTAGAAGAGGGTTGCAGGGGCATAAGGAGTGGGTGACAGAAGTAAATGTTTTGGGGGTTGTTGAACATGAAAATCTTGTCAAGTTAGTGGGCTATTGTGCTGAGGATGATGAAAGAGGGATCCAACGACTGCTGATATATGAATATATGCCCAATAGAAGCGTGCAGGATCACTTAACAAATCGATTTGAAACACCTCTTTCATGGTCCACAAGACTGAGAATAGCCCAAGATGCTGCTCGTGGCTTAGCATACCTCCATGAAGGAATGGAATTTCAGATTATCTTTAGAGATTTCAAATCTTCGAATATTCTCTTGGATGAGCAGTGGAATGCAAAGTTGTCTGACTTTGGATTGGCCAGGCTGGGGCCTTCTGACGGACTAAGTCATGTATCAACAGCGGTTGTAGGAACCATTGGATATGCAGCTCCTGAATACATCCAAACTGGGCGGCTCACAGCCAAAAGTGATGTGTGGAGCTATGGAGTCTTTCTCTATGAGCTCATCACTGGTAGGCGGCCTTTGGACAGAAACCGCCCCAAGAATGAGCAAAAACTATTGGAGTGGATCAGGCCACACCTCTCTGATGTAAAGAAGTTCCAGCTGATTTTGGACCCTAGGCTCGAAGGAAAATACACCCTTAAGTCTGCCCAGAAACTAGCAGCAGTAGCCAACAAGTGCTTGGTGAGACAAATAAAAACACGCCCCAAAATGAGTGAAATCTTAGACATGGTGAATCGGATTGTGGAGGCAGCGGAAACTGGGAGCCCTCAACCTCCGATAAAGAGTTCTACTCCAAGAGATGCTCCTGAGGAATCCAAGAGAAAAAGACTGAAGACAATGTTTGTGGATCCAATAATAGGAGAAAACAGGAGATTGGTTTGGCAAAAATGGAGACCTAAGCTGGTGAGGACTTCCTGA 1290 0.4426 MTCFPFHKGEKNDEPKATKSTSVRSSTSISMSTDHEVRRSGSEFNSQNASDISTESSAKTSFTSLQQRPSNLKVFTFSELKSATKNFSRSLMIGEGGFGGVYRGVIRSTEDPHKKIDIAVKQLSRRGLQGHKEWVTEVNVLGVVEHENLVKLVGYCAEDDERGIQRLLIYEYMPNRSVQDHLTNRFETPLSWSTRLRIAQDAARGLAYLHEGMEFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLSHVSTAVVGTIGYAAPEYIQTGRLTAKSDVWSYGVFLYELITGRRPLDRNRPKNEQKLLEWIRPHLSDVKKFQLILDPRLEGKYTLKSAQKLAAVANKCLVRQIKTRPKMSEILDMVNRIVEAAETGSPQPPIKSSTPRDAPEESKRKRLKTMFVDPIIGENRRLVWQKWRPKLVRTS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0644 429 FunFam Serine/threonine-protein kinase BIK1 53 172 - -
Vvi13g0644 429 MobiDBLite consensus disorder prediction 42 64 - -
Vvi13g0644 429 Pfam Protein tyrosine and serine/threonine kinase 92 366 IPR001245 GO:0004672|GO:0006468
Vvi13g0644 429 Gene3D Transferase(Phosphotransferase) domain 1 173 382 - -
Vvi13g0644 429 MobiDBLite consensus disorder prediction 376 398 - -
Vvi13g0644 429 PANTHER OS01G0588500 PROTEIN-RELATED 47 370 - -
Vvi13g0644 429 FunFam Serine/threonine-protein kinase PCRK2 173 381 - -
Vvi13g0644 429 Gene3D Phosphorylase Kinase; domain 1 44 172 - -
Vvi13g0644 429 MobiDBLite consensus disorder prediction 19 35 - -
Vvi13g0644 429 SUPERFAMILY Protein kinase-like (PK-like) 63 368 IPR011009 -
Vvi13g0644 429 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0644 429 MobiDBLite consensus disorder prediction 1 64 - -
Vvi13g0644 429 ProSitePatterns Protein kinases ATP-binding region signature. 93 121 IPR017441 GO:0005524
Vvi13g0644 429 CDD STKc_IRAK 93 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0644 Vvi-Chr13 6050283 6055534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0644 1 396 Glycoside Hydrolase AT3G07070 42.714 2.80e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi13g0644 PK_Tyr_Ser-Thr 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0644 - - vvi:104881112 835.099