Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0643 ATGATACCGTGTCCATTGGGTTCTTACTGCCCACTTGCAAGGGTCAATAAAACGACTGGTGTATGTGAACCATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGTGGATCATATTGTCCTACAACCACCCAAAAAATTCCCTGCAGTGACGGGCATTATTGCAGGATGGGTTCTACATCTGAGAAAAGGTGCTTCAAGTTGGCTTCATGTAATCCAAACACTGCAAATCAAAACATTCATGCATATGGAGCTATGCTTATAGCTGCTTTGAGCACTCTACTGCTCATTATTTATAACTGTTCTGGCCAAGTACTAACAACTCGGGAAAGGAGACAGGCCAAAACCAGGGAAGCAGCAGCAAGAAGTGCAAGGGAGACAACACGAGCACGTGAAAAGTGGAAAGCTGCAAAAGATGCTGCCAAGAGACGTGCAGTTGGATTGCAAGCTCATCTGTCTCGCACATTTTCTCGTAAAAAATATGTCACTAATTCTGAGGAACTTAGGATTTTGGGTCAGGATAAACCTGTGACAGATGATGACATATTATCACCTATGCACATAAGTGCTTCAGGGGCATCTCAGCTTTCATCTGTGGCAGCAAAAGGAAAGGAAAAAGAACCTAGTGAGCTTGCAAAGATGATGCATGTACTTGATGATGACCTTGATAGTTTTGAACGTTTCAATCTGGAGAATGGAGATAAAAATAGTAAAAAGCATATGCCAAAGGGGAAAGAGATACACACACATAGCCAAATTTTTAAGTACGCATATGCTCAACTTGAGAAAGAGAAAGCTCTGCAACAGGAAAACAAGGACCTTACCTTTTCAGGAGTAATTTCAATGGCTACTGATACTAGAATCAAGAAAAGGCCTCTAATTGAGGTTGCTTTCAGGGATCTAACCCTTACTTTGAAAGGGAAAAACAAACATCTTTTGAGGTGTGTCACTGGAAAAATTATGCCTGGACGCATTACTGCTGTCATGGGTCCATCTGGAGCTGGAAAAACAACATTTATTTCTGCTCTGGCTGGAAAGGCGATTGGATGTAGAATGGCTGGTCTGATTCTTATAAATGGAGTGAATGAATCAATCCACTCATACAAGAAAATCATGGGATTTGTGCCACAAGATGACATTGTGCATGGAAATTTGACAGTGGAAGAAAATCTCTGGTTCAGTGCAAGATGCAGACTATCCATGGACTTGCCAAAGGCGGAAAAGGTTCTTGTCATTGAAAGAGTTATTGAGTCCTTGGGGCTACAGGCAGTGCGGGATTCCTTGGTTGGAACAGTTGAGAAGCGAGGAATCTCTGGAGGCCAGCGGAAGCGTGTAAATGTTGGCCTGGAAATGGTGATGGAACCTTCACTTTTGATCTTAGATGAACCCACTTCTGGTTTGGACAGTTCATCTTCTCAGCTACTTCTCAAAGCACTTCGTCGTGAAGCCCTTGAGGGGGTAAACATCTGCATGGTTGTTCACCAACCAAGCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCTGGCCTTGGAATCAATGTCCCAGAGCGTGTTAATCCTCCAGACCACTTCATTGACATTTTGGAGGGTCTGGTAAAACCAAGCACAAGCTCAGGTGTGAGTTATAGTGACCTTCCTATCAGATGGATGCTTCATAAAGGATATCCAGTCCCCCCTGATATGCAAGAGAATGCTGCTGGGCTTACTATGCCCTCAATGGGTGTAAATCCAGTTAATGGAACAAATTCTGATGGTGCTGGAACAGAGGATAAGTCTTTTGCTGGAGAATTATGGCAGGATGTGAAGTGTAATGTGGAGCTACATCGGGATAATATTCGACACAACTTCTTGAAGTCAAACGACTTGTCCAATCGGAGAACTCCTGGAGTTTTTCTGCAGTACAAATACTTTCTTGGCAGGGTTGCTAAGCAACGACTAAGAGAAGCTAGAATACAAGTAATAGATTATCTGATCTTATTACTTGCTGGAGCCTGCCTAGGATCAATTGCTAAAGTGAGCGATGAAACCTTTGGAGCACTTGGTTATACTTATACCATCATTGCAGTTTCTCTCCTATGTAAAATTGCGGCTTTGAGATCATTTTCTCTGGAGAAGTTACAGTACTGGAGAGAGAGTGCATCTGGCATTAGCAGTCTGGCTTATTTTCTCTCCAAGGATACAATTGACCTTTTCAATACAATTATCAAGCCTGTGGTGTATCTCTCCATGTTTTATTTCTTCAATAATCCCAGATCTTCTTTCTCTGATAATTACATTGTTCTCATCTGCCTTGTATACTGTGTGACTGGAATTGCCTATATGTTGGCCATCTTCCTTGAACCTGGTCCAGCACAGCTGTGTTCAGTGCTTCTTCCTGTTGTTTTGACTCTTATTGCAACTCGGACTGGAGAGAGTAAAATTTTGAAGAATTTAGCGAACTTTTGTTACCCAAAATGGGCTTTAGAAGCATTTGTGATTGCAAATGCTGAGAGGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATAGGCATAGTTTGTCGGGCCATAGCTTTCACTGGCATGGTGACTTTCCGAAGGAAGTGA 2778 0.4237 MIPCPLGSYCPLARVNKTTGVCEPYLYQLPPGQPNHTCGGANIWADVGSSGEVFCSSGSYCPTTTQKIPCSDGHYCRMGSTSEKRCFKLASCNPNTANQNIHAYGAMLIAALSTLLLIIYNCSGQVLTTRERRQAKTREAAARSARETTRAREKWKAAKDAAKRRAVGLQAHLSRTFSRKKYVTNSEELRILGQDKPVTDDDILSPMHISASGASQLSSVAAKGKEKEPSELAKMMHVLDDDLDSFERFNLENGDKNSKKHMPKGKEIHTHSQIFKYAYAQLEKEKALQQENKDLTFSGVISMATDTRIKKRPLIEVAFRDLTLTLKGKNKHLLRCVTGKIMPGRITAVMGPSGAGKTTFISALAGKAIGCRMAGLILINGVNESIHSYKKIMGFVPQDDIVHGNLTVEENLWFSARCRLSMDLPKAEKVLVIERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLKALRREALEGVNICMVVHQPSFALFKMFEDLVLLAKGGLTVYHGPVKKVEEYFAGLGINVPERVNPPDHFIDILEGLVKPSTSSGVSYSDLPIRWMLHKGYPVPPDMQENAAGLTMPSMGVNPVNGTNSDGAGTEDKSFAGELWQDVKCNVELHRDNIRHNFLKSNDLSNRRTPGVFLQYKYFLGRVAKQRLREARIQVIDYLILLLAGACLGSIAKVSDETFGALGYTYTIIAVSLLCKIAALRSFSLEKLQYWRESASGISSLAYFLSKDTIDLFNTIIKPVVYLSMFYFFNNPRSSFSDNYIVLICLVYCVTGIAYMLAIFLEPGPAQLCSVLLPVVLTLIATRTGESKILKNLANFCYPKWALEAFVIANAERYYGVWLITRCGSLLKSGYNLHDWDLCIFILILIGIVCRAIAFTGMVTFRRK* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0643 925 Gene3D - 305 556 IPR027417 -
Vvi13g0643 925 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 57 912 - -
Vvi13g0643 925 Pfam ABC-2 type transporter 515 925 IPR043926 GO:0140359
Vvi13g0643 925 Pfam ABC transporter 337 486 IPR003439 GO:0005524
Vvi13g0643 925 Coils Coil 145 165 - -
Vvi13g0643 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 540 IPR027417 -
Vvi13g0643 925 FunFam ABC transporter G family member 24 311 553 - -
Vvi13g0643 925 ProSitePatterns ABC transporters family signature. 458 472 IPR017871 GO:0005524|GO:0016887
Vvi13g0643 925 SMART AAA_5 343 535 IPR003593 GO:0016887
Vvi13g0643 925 CDD ABCG_EPDR 315 541 - -
Vvi13g0643 925 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 317 559 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0643 Vvi-Chr13 6030598 6042792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0643 273 518 Calmodulin-binding Proteins AT2G36910 24.514 1.86e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0643 - - vvi:100244471 1802.72