Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0639 ATGAAACGCCTCCTCCTCCGGCGCGATTCGATATCACCCCGGCAACATCTCCAGGTTGAATCCTCGGAGTTTGAGGGGGTTGTAGTGCCTCCCAATCCCATGTGCAAATCCAAAAGCAGCATCAGTGCAGTGGAGCCCAGTGTCAACCACGGCCGATCAGACACACCCAGAAGCTCCCGAGTCACCAGGACGTCCAGGTCGTCTTCTTCTGCGACGGATCGCAGCAATTTTAATCTTCCCACCAATTACAACACCAGTGGGACTTCCAGGTCATCTGAGTCGACTCCCGCTTCGCTTTCTTGCATCAGAGAGTCCTTGCCGGAGAATCCCCACGTCTACGACATCTCCGAAATCTGCTCCGCCACCGGCAATTTTCTTGCCAAGAAGTTCTCCTCCTCCTCTTCCGCTTGGCGCTGCTCTGTCCGCGGCAAAGACGTGGTCATCTTCCAACGAAAGCTCCGCCGCCCCATCGAGACTGCGGAGATTCGCAAACTGCTGTCGGTGATTTGCAAAAGCCACCATGGGAGCTTGATCAAGCTCCTCGGGGCTTCGATTTCTGGAAACCACATTTACCTCGTTTACGATTACGTTGATGGCGCTAGCCTCGCAGATTGTCTCAGAAACCCTAGAAACCCTAATTTCACAGTTCTGTCGAATTGGGTCTCGAGAATGCAGATCGCGGCGGACTTGGCTCACGGGCTTGACTACGTCCACCATTGCACTGGATTGGATGCGAGTTTTGTGCACAATCGTATCAGGAGTTCCAGCATTCTCGTGATTAACGACTCGTTGAATGCCAAGATATGCCATTTCGGCACCGCACAACTCTGCGGCGAAATCGCGGAAGGTACCGGAAAAAATTCAGGGTCCTCCCAATTGAAAAGATCGGGCAGTGCGGTGATGAAGATCGAGGGGACGAGAGGGTACATGGCACCGGAATTTCAGTTGACAGGATTGGCGACGCGGAAATCGGATGTGTATGCGTTTGGGGTGGTGATTTTGGAGATCTTATCTGGAGCAGAGGCGTTGAAGTACATTGCGGACGATGAGAGTGGTACATATAAGAGAGTGAGCGTGATTGAAACAGCTAGAGAGGCCATTGAAGCTGAAGGTGGCGGCGGCGGTGGTGGGGTGAGGAGGTGGGTGGACAGCAGGCTCAAGGACTCGTATCCGGTGGAGGTGGCGGAGAAGATGGTGCGTTTGGGTCTGGAGTGCGTGGAGGGGGATCCGGGTAAGAGGCCCAATATGAGTGAAGTAGCGGCTCGAATTTCTAAGCTGTACTTAGAGTCCAAGAATTGGGCCGATCGAATAGGGATGCCTACCGATTTCTCTGTCTCAATGGCACCTCGATGA 1353 0.5358 MKRLLLRRDSISPRQHLQVESSEFEGVVVPPNPMCKSKSSISAVEPSVNHGRSDTPRSSRVTRTSRSSSSATDRSNFNLPTNYNTSGTSRSSESTPASLSCIRESLPENPHVYDISEICSATGNFLAKKFSSSSSAWRCSVRGKDVVIFQRKLRRPIETAEIRKLLSVICKSHHGSLIKLLGASISGNHIYLVYDYVDGASLADCLRNPRNPNFTVLSNWVSRMQIAADLAHGLDYVHHCTGLDASFVHNRIRSSSILVINDSLNAKICHFGTAQLCGEIAEGTGKNSGSSQLKRSGSAVMKIEGTRGYMAPEFQLTGLATRKSDVYAFGVVILEILSGAEALKYIADDESGTYKRVSVIETAREAIEAEGGGGGGGVRRWVDSRLKDSYPVEVAEKMVRLGLECVEGDPGKRPNMSEVAARISKLYLESKNWADRIGMPTDFSVSMAPR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0639 450 MobiDBLite consensus disorder prediction 30 96 - -
Vvi13g0639 450 ProSiteProfiles Protein kinase domain profile. 77 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0639 450 Gene3D Transferase(Phosphotransferase) domain 1 198 438 - -
Vvi13g0639 450 Gene3D Phosphorylase Kinase; domain 1 85 196 - -
Vvi13g0639 450 Pfam Protein kinase domain 159 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0639 450 PANTHER OS09G0572100 PROTEIN 34 450 - -
Vvi13g0639 450 MobiDBLite consensus disorder prediction 35 96 - -
Vvi13g0639 450 SUPERFAMILY Protein kinase-like (PK-like) 155 428 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0639 Vvi-Chr13 5986256 5987608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0639 108 433 Receptor kinase-like Gene Family AT1G51940 32.840 5.99e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi13g0639 Pkinase 4.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0639 - - vvi:100256497 811.601