Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0637 ATGGGTAATGTTGAGATACCCATTTGGCTAAAAGGGTTGCCATTGGCTCCCGAATTTCGCCCAACGGACACTGAATTTGCTGACCCAATTGCTTATATATCCAAAATTGAGAAAGAAGCTAGTGCATTTGGTATATGTAAAGTCATTCCTCCATTGCCGAAACCTTCAAAAAGATATGTGATTTCTAACTTGAACAAGTCATTATCAAAGTGCCCGGAATTGGGTTCTGATGTAAATGCCTCAACTGTTTGTTCTTCGGCAAAGATGGGTTCTGGGGATGGGGACGCTGATGGGGAGGCTCGTGCTGTATTTACGACAAGACACCAAGAATTGGGTCAAAACCTGAAGAGAACTAAGGGAGTAGTTCAGCCGCAAGCGGGGGTTCATAAGCAAGTGTGGCAAAGTGGAGAGATTTATACATTAGAACAGTTTGAATCTAAGTCAAAGGCTTTCGCACGGAATCTATTGGGTATGATTAAGGAGGTTTCTCCATTAGTAGTGGAGGCAATGTTTTGGAAGGCAGCATCCGAGAAGCCGATTTATGTGGAGTATGCAAATGATGTGCCAGGGTCTGGTTTTGGAGAGCCAGAGGGTCTTTTTCAATATTTTCATGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACATTTGGTCGATATTGTCGAGGAAGAGCTGATTGTGAGAAACATATAGCAGACAGTGTAAGGGATTCCCATAGTAATGAAAATAAAGATGCAGCCACCAAGAATAATGTAAGTCCATCTTTACCGACATCCAAGTCATGCACTAGTTTACCAATCATGTCATCAGATGAAACTTCACGCCAAAAGAATTTAAATGGTAGTAATGAGATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTACAAGTAATTGCACGCTCCCCAGGTTCACTTACACGTTTTATGCCAGATGATATCCCAGGTGTTACTTCTCCCATGGTTTATATTGGTATGTTGTTCAGCTGGTTTGCTTGGCATGTTGAAGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGCTCTCCAAAGACTTGGTATGCAGTCCCAGGAGATTATGCATTTGCTTTTGAGGAAGTCATTCGTTCACAGGCTTATGGAGGAAATATTGACCGTTTAGCTGCTCTCACACTCTTGGGCGAGAAGACAACTCTTCTATCACCAGAAGTAGTTGTTGCATCGGGAATTCCTTGTTGTAGGCTGATACAGAACCCTGGAGAATTTGTTGTGACTTTTCCAAGGGCTTACCATGTAGGATTCAGCCATGGTTTCAATTGTGGTGAAGCTGCAAACTTTGGAACTCCACAATGGCTTAAAATAGCAAAAGAAGCTGCGGTGCGCAGGGCTGCTATGAGTTATCTCCCCATGCTGTCTCATCAGCAGCTGCTATACCTGTTGACCATGTCTTTTGTTTCAAGAGTGCCACGGTCCTTAATACCAGGGGCTCGGAGTTCTCGTCTGAAAGATCGCCAGAAGGAAGAAAGAGAACTGTTAGTAAAGCAGGCATTTATAGAAGATATGTTAAATGAAAATAATCTATTATCTGTTCTTCTTGGGAAAGGATCAACCTACCGTGCAGTGTTGTGGGACCCTGAGTCACTACCGTCTTCTACTAAAGAGCCTCAGTTGTCCACTGAGATCACCACTGTTTCTACCAAACCAAGAGAAAATATTTCTGAGGTTGAGAACAAGGACGATAGCAATCAGAATGATTTGTTTGACAAGATGAGCTTGTATATTGAAAATGTAAATGATTTATATTTGGACGATGATGATTTGTTGTGTGATTTCCAAGTCGATTCGGGGACTTTGGCATGTGTGGCTTGCGGGATTCTTGGTTTTCCATTTATGTCAGTGGTACAGCCATCTGATAGAGCATCAATGGAATTTCTTCATGCAGATCATCCTCTGGTTGAAGATCGAGCTGGAGATACAGAAACTATGAAATCTTACTGTCCGTCAGCCGTTCATGGCACTTCTAAAGGTCCTGTTTCAGGTACACAAGTTGACAAAGATGAAACAACCAAGGAGGAAATATCTTCTGCTATCCTGATGACCGAAAACCTGAAGTGTAGGAAAGATTTGAAGTTGATAAAAGATGGAAAGGAATCCTCAATAGATGCTAACAGTTTATCATCCGAAGTAACTGAGAGCATCAAGCTGGACAAGTGCACTTCACTTCAGCATCCAACTGGGGCCTCTTCAAATACAGCCTTGGACCAATCCAAGCTTCATTCTGCAGGGGATCTTCCTCCTATTCCTGATCTTTCTCTGCCTCCTGAGAGCCTGCAAATGCCCTTAATAACCAATTTTGAGAAGGGATGGAATAAGTCTACTGAACTTTTGAGACCGCGGATTTTCTGCCTAGAGCATGCTGTTCAAATTAAGGAGTTGCTGCAGCCCAAAGGTGGAGCAAGCATGCTTATAATTTGCCATTCAGACTATCAAAAAATAAAGGCACATGCCACAACTGTTGCAGAGGAAATTGGTCACCCTTTTAATTATAATGAGATTCCTTTAGATACTGCCTCCCAGGAAGATCTGAATTTGATCAATCTGGCAATCGATGATGAAGAACATGTTGAATGTGGAGAAGACTGGACCTCGAAATTGGGTATCAACTTGCAGTACTGTGTTAAGATCAGAAAGAACTCCCCATCTAAGCAAGTACCACATGCGTTGGCCTTGGGTGGTTTGTTCACTGACACAACTTCCAGTTCTAATTTCTTGAGCCTCAAGTGGCAGTCCAGGAAATCTCGCTCAAAATTGAAGTCAAATCTTCCATCCCATATCAAACCATATGAGAGTAATCAAATAAAGGAGGTTGAAGTTATGGAAGGAAAGTCAGTTGGTAGCACAATTAGAAAAGAAGATAAACTTATTCAATATTCTCGAAGAATTTTCAAGTTTAAATCAGGTGGTGCTGAAGGAGCAAGTAGGGCTCGTGGACGCCCTAGAAAGAACCTGCCAAAAGACGTTTCAGCTACTAGTTGTGATATTGTCAAAAATATCAGCAGGACATCTAATAATAGTCCAAATATTGAAAAAGAGGGAGGTGAATCTGCAGGGTTGGATTTCTATGCTTCTTTTGGAAAATCTGAAATGCTTCATGAAGTCCAGGTGCTCGAGGCAACTGAGGATTTGAGCAAGAATGCTGTTCCTGCACAGGTTATAAATCCACTTGTCACTGCTACCCCAGTGGTTAAAAGTGTTGAGGCACGGATTAATAATCAAACTTTGGAGGATGAGGCATGTAATTCAGTGACCTGTGATGGTTCTGAGATGCCACTGGAGATTAATATCACTGAGGTAACTGGTGAGAAAAACAAGATCTTGGGCGCTGAAAATGATTCAACTCTACCTATCATTTCCGTCCCAACTGTTGAAAAATCTGGAATTCAAATGGATCATCAAATTATGGAGGAAGTCAACATGACAAATGAGCCTGGTAATTTGACTCAGTATAATTCTGAAGGACAGCATGGCATCCAGGGTGATGGGGATGTGTTGATGAATGAAGTTTCTGATTGTGACAACTTTACAAGTTCCCATGGCCCAGTTGGGGAAGGTTTTGATGCGCAGATAGAGAACGTGGTTATAGAGGAATCTTGCACGAATGGTGAGATAGGTGAATGCATGATTTTGGATAAAGAAGCATCAGAGCAGGGAATCCTGATTGCAGATGGAAGTGGTGATGAGGAACACATTTTAAGCAATGATGCAATGACAAACCAGCCTCCTCCTCCCTCAACGGTAGAAAGTTCAGAAATTCCAAGAGAGATCTGTCCTGTGGAAGACTTGAGCAATGGTGCTGAGGTTTGTTCTTCACTAGACAACAGAGAATTGGAAAACATCGACTCCAAGGTTTGTTCTTCACCAGACAACAGAGAATTGGAACATATTGACTCCAAGGTCTATTCTTCACCTGACAATAGGGACTTGGAAAACATGGACTCCAATAAGGTGAACCCCAAATCAACCAAAAAAGCAGAGAGAAAAAGAAAGCGAGAAGGGGGGCAGAAAACAGAAGACAAATTCTACTTTGATAGCTTTATTAGGAGTCCATGTGAAGGGTTGAGGCCAAGGGCCAAGAAAGATGGTAGCACTGGGGCCGACACTAACAAACCGGTTGTGGAGAAGCCAATGGCCAAAACGAGAAAACCTGCAGATACATCAGGTCCCCACAAGGATAAGAAAGAAAACACAAAGGGGTCACACAGGTGTGACCTAGAAGGGTGTCGGATGAGTTTCAAGACGAAGGCAGAGCTACTCCTTCACAAGCGCAACAGGTGCCCACATGAAGGGTGTGGGAAGAAGTTCAGTTCCCACAAGTATGCGATGCTTCATCAAAGAGTTCACGACGATGAGAGGCCACTCAAGTGCCCGTGGAAGGGTTGCAGCATGTCATTCAAGTGGGCGTGGGCGAGGACAGAGCATGTACGGGTGCACACTGGAGCGCGGCCATACCAATGCAAGGTGGAGGGGTGTGGGCTCTCATTCAGGTTTGTATCGGATTTTAGCCGGCATAGACGGAAAACAGGTCACTATGTGAACAACACACCCAAGTGA 4602 0.4342 MGNVEIPIWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKVIPPLPKPSKRYVISNLNKSLSKCPELGSDVNASTVCSSAKMGSGDGDADGEARAVFTTRHQELGQNLKRTKGVVQPQAGVHKQVWQSGEIYTLEQFESKSKAFARNLLGMIKEVSPLVVEAMFWKAASEKPIYVEYANDVPGSGFGEPEGLFQYFHGRRRRRRRRRTFGRYCRGRADCEKHIADSVRDSHSNENKDAATKNNVSPSLPTSKSCTSLPIMSSDETSRQKNLNGSNEMEGTAGWKLSNSPWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSPKTWYAVPGDYAFAFEEVIRSQAYGGNIDRLAALTLLGEKTTLLSPEVVVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKIAKEAAVRRAAMSYLPMLSHQQLLYLLTMSFVSRVPRSLIPGARSSRLKDRQKEERELLVKQAFIEDMLNENNLLSVLLGKGSTYRAVLWDPESLPSSTKEPQLSTEITTVSTKPRENISEVENKDDSNQNDLFDKMSLYIENVNDLYLDDDDLLCDFQVDSGTLACVACGILGFPFMSVVQPSDRASMEFLHADHPLVEDRAGDTETMKSYCPSAVHGTSKGPVSGTQVDKDETTKEEISSAILMTENLKCRKDLKLIKDGKESSIDANSLSSEVTESIKLDKCTSLQHPTGASSNTALDQSKLHSAGDLPPIPDLSLPPESLQMPLITNFEKGWNKSTELLRPRIFCLEHAVQIKELLQPKGGASMLIICHSDYQKIKAHATTVAEEIGHPFNYNEIPLDTASQEDLNLINLAIDDEEHVECGEDWTSKLGINLQYCVKIRKNSPSKQVPHALALGGLFTDTTSSSNFLSLKWQSRKSRSKLKSNLPSHIKPYESNQIKEVEVMEGKSVGSTIRKEDKLIQYSRRIFKFKSGGAEGASRARGRPRKNLPKDVSATSCDIVKNISRTSNNSPNIEKEGGESAGLDFYASFGKSEMLHEVQVLEATEDLSKNAVPAQVINPLVTATPVVKSVEARINNQTLEDEACNSVTCDGSEMPLEINITEVTGEKNKILGAENDSTLPIISVPTVEKSGIQMDHQIMEEVNMTNEPGNLTQYNSEGQHGIQGDGDVLMNEVSDCDNFTSSHGPVGEGFDAQIENVVIEESCTNGEIGECMILDKEASEQGILIADGSGDEEHILSNDAMTNQPPPPSTVESSEIPREICPVEDLSNGAEVCSSLDNRELENIDSKVCSSPDNRELEHIDSKVYSSPDNRDLENMDSNKVNPKSTKKAERKRKREGGQKTEDKFYFDSFIRSPCEGLRPRAKKDGSTGADTNKPVVEKPMAKTRKPADTSGPHKDKKENTKGSHRCDLEGCRMSFKTKAELLLHKRNRCPHEGCGKKFSSHKYAMLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHVRVHTGARPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVNNTPK* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0637 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1480 1522 IPR036236 -
Vvi13g0637 1533 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1466 - -
Vvi13g0637 1533 Pfam jmjN domain 17 50 IPR003349 -
Vvi13g0637 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1472 1494 IPR013087 -
Vvi13g0637 1533 FunFam Probable lysine-specific demethylase ELF6 1467 1496 - -
Vvi13g0637 1533 Gene3D Classic Zinc Finger 1438 1524 - -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 1390 1416 - -
Vvi13g0637 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1442 1464 IPR013087 -
Vvi13g0637 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1470 1499 IPR013087 -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 1299 1355 - -
Vvi13g0637 1533 SMART JmjN_1 15 55 IPR003349 -
Vvi13g0637 1533 ProSiteProfiles JmjC domain profile. 294 460 IPR003347 -
Vvi13g0637 1533 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 244 285 - -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 664 685 - -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 233 285 - -
Vvi13g0637 1533 Gene3D Cupin 9 464 - -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 1368 1416 - -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 1299 1337 - -
Vvi13g0637 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1500 1531 IPR013087 -
Vvi13g0637 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1428 1477 IPR036236 -
Vvi13g0637 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1502 1526 IPR013087 -
Vvi13g0637 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1440 1469 IPR013087 -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 985 1004 - -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 1247 1268 - -
Vvi13g0637 1533 SMART c2h2final6 1500 1526 IPR013087 -
Vvi13g0637 1533 SMART c2h2final6 1470 1494 IPR013087 -
Vvi13g0637 1533 SMART c2h2final6 1440 1464 IPR013087 -
Vvi13g0637 1533 SMART c2h2final6 1417 1439 IPR013087 -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 737 769 - -
Vvi13g0637 1533 SMART cupin_9 291 460 IPR003347 -
Vvi13g0637 1533 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Vvi13g0637 1533 MobiDBLite consensus disorder prediction 737 754 - -
Vvi13g0637 1533 SUPERFAMILY Clavaminate synthase-like 224 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0637 Vvi-Chr13 5944789 5967342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0637 786 977 C2H2 Transcription Factor Family AT5G04240 52.083 4.23e-58 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi13g0637 JmjC 9.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0637 - - vvi:100256547 3030.35