Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0631 ATGGAACTTTCAAATGGAAACCACTGCCACACAAATGGGAAGGCCTCCATTGAGAGCTTTTGCATGGGAGACACTGGTACTAAAGCTGCTGCCGATCCCCTCAACTGGAACATGGCGGCGGAGTCCCTCAAGGGGAGTCACCTGGATGAGGTGAAGCGGATGGTGGAGGAGTACCGGAGGCAGGTGGTGCAGCTGGGCGGTGAGACGCTCACAATATCTCAGGTGGCCGCGGTGGCCTCCCGCGATACTGGGGTGACGGTGGAGCTGTCGGAGGAGGCGAGAGAGGGAGTAAAGGCCAGCAGTGACTGGGTCATGGACAGCATGAACAATGGTACAGACAGCTACGGCGTGACCACAGGTTTCGGTGCTACCTCTCACAGAAGAACCAAACAAGGCGGAGCCCTCCAAATGGAGCTCATCAGGTTTTTGAATGCCGGAATTTTTGGAAACGGGACGGAATCTTGCCACACACTGCCTCACTCTGCAACAAGGGCATCCATGCTGGTGAGGATCAACACACTTCTTCAAGGATACTCGGGCATTAGATTTGAGATATTGGAGGCTATCACCAAGCTCATCAACCACAACATTACCCCTTGCTTGCCTCTCCGGGGCACCATCAGCGCATCCGGTGACCTTGTTCCTCTCTCCTACATTGCTGGGCTTTTACTTGGGAGGTCCAGTTGCAAGGCTGTCGGGCCCAATGGGGAGCCCCTCAGTGCTGAGGAGGCCTTCCGGGTTGCAGGAATCAAGGGTGGATTCTTTGAACTGCAGCCCAAGGAGGGGCTTGCTCTAGTCAATGGCACTGCTGTTGGGTCTGGCATGGCCTCCATGGTTCTCTTTGAAGCAAACATCCTTGCAGTCCTTTCGGAAGTTCTATCTGCACTCTTTGCTGAAGTCATGCAAGGAAAACCCGAATTTACAGACCACTTGACCCATAAATTGAAGCATCATCCCGGCCAAATTGAGGCTGCAGCTATTATGGAACACATTCTAGATGGAAGCTCTTACATTAAAGCAGCTCAGAAGTTGCATGAGATGGACCCTCTCCAGAAGCCTAAACAAGACCGATACGCCCTCCGAACATCTCCCCAGTGGCTTGGCCCCCAGATTGAAGTGATCAGAGCAGCAACGAAGTCCATTGAAAGGGAGATAAACTCGGTAAACGACAATCCCTTGATCGATGTTTCCAGGAATAAAGCTCTACATGGGGGCAATTTCCAAGGGACCCCAATTGGTGTTTCCATGGACAACACTAGGCTTGCCATTGCCTCCATCGGAAAGCTCATGTTTGCACAATTCTCCGAGCTTGTTAATGACTTCTACAACAATGGGTTGCCTTCAAATCTGTCGGGTGGCCGCAATCCAAGCTTGGACTATGGCTTCAAAGGTGCCGAGATTGCAATGGCCTCTTACTGCTCCGAGCTCCAGTTCCTTGCTAATCCTGTGACCAACCATGTCCAGAGCGCAGAGCAACACAACCAAGATGTGAACTCCTTGGGACTCATTTCTTCAAGAAAAACTGCTGAAGCCGTGGACATATTGAAGCTCATGTCCTCCACTTTCTTGATTGCCTTATCCCAAGCCATTGATCTGAGGCATTTGGAGGAGAATCTCAAGAACACAGTGAAGAACACGGTGAGCCAAGTGGCCAAGAGAGTCCTAACCATTGGCTTCAATGGTGAGCTTCACCCCTCCAGGTTCTGCGAAAAAGACTTGCTCAAAATTGTCGATAGAGAACACGTTTTCGCATACATTGATGACCCCTGCAGCTCCACCTATCCATTAATGCAGAAGCTAAGGCAAGTCCTAGTCGAGCATGCTCTGATCAATGGTGAAAGAGAGAAGAACTCTAGCACTTCCATTTTCCAAAAGATCGTAGCCTTCGAGGATGAGCTAAAAGCCCTTCTGCCCAAAGAAGTAGAGAGCACAAGAATCGACTACGAGAACGGAAATTCTGCCATTTCCAACAGAATCAAGGACTGCAGATCCTACCCTCTGTACAAGTTTGTGAGGGAAGAACTGGGAGCTAGTTTCCTTACAGGAGAGAAGACTACATCACCCGGTGAAGAGTGTGACAAGGTGTTCACAGCTATGTGTGCAGGGAAGCTCATTGATCCACTGCTGGATTGTTTGAAGGAGTGGAATGGAGCTCCTCTCCCAATCTGCTAG 2172 0.5055 MELSNGNHCHTNGKASIESFCMGDTGTKAAADPLNWNMAAESLKGSHLDEVKRMVEEYRRQVVQLGGETLTISQVAAVASRDTGVTVELSEEAREGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQMELIRFLNAGIFGNGTESCHTLPHSATRASMLVRINTLLQGYSGIRFEILEAITKLINHNITPCLPLRGTISASGDLVPLSYIAGLLLGRSSCKAVGPNGEPLSAEEAFRVAGIKGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLSEVLSALFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLIALSQAIDLRHLEENLKNTVKNTVSQVAKRVLTIGFNGELHPSRFCEKDLLKIVDREHVFAYIDDPCSSTYPLMQKLRQVLVEHALINGEREKNSSTSIFQKIVAFEDELKALLPKEVESTRIDYENGNSAISNRIKDCRSYPLYKFVREELGASFLTGEKTTSPGEECDKVFTAMCAGKLIDPLLDCLKEWNGAPLPIC* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0631 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
Vvi13g0631 723 Gene3D - 23 269 IPR024083 -
Vvi13g0631 723 FunFam Phenylalanine ammonia-lyase 536 657 - -
Vvi13g0631 723 CDD PAL-HAL 68 533 IPR001106 -
Vvi13g0631 723 Coils Coil 48 68 - -
Vvi13g0631 723 Gene3D Fumarase/aspartase (Central domain) 270 718 - -
Vvi13g0631 723 Pfam Aromatic amino acid lyase 70 546 IPR001106 -
Vvi13g0631 723 FunFam Phenylalanine ammonia-lyase 24 269 - -
Vvi13g0631 723 NCBIfam phenylalanine ammonia-lyase 32 713 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi13g0631 723 Gene3D - 536 657 IPR023144 -
Vvi13g0631 723 FunFam Phenylalanine ammonia-lyase 270 559 - -
Vvi13g0631 723 PANTHER HISTIDINE AMMONIA-LYASE 27 723 IPR001106 -
Vvi13g0631 723 SUPERFAMILY L-aspartase-like 32 723 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0631 Vvi-Chr13 5881431 5884963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0631 27 723 Monolignol Biosynthesis Gene Families AT3G53260 83.070 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0631 K10775 - vvi:100233012 1431.77