Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0624 ATGATTGGGCCTAACTTCATGGACGAGATAGATTGCGGCAGCTTCTTCGACCACATCGACGACTTGCTCGAATTCCCTCCCGAGGACGTTTCCGGCGGCCTCATGGGCGGGGACTGCAACTCCTTCCCCAGCATTTGGACAAACGCATCGGACCCATTGCCCGGACCCGACTCGGTGTTCTCCGGTCCCAACAGCAACAGCAATTCCGACCTCTCGGCGGAGCTCTCCGTTCCGTATGAGGACATCGTTCAGCTCGAGTGGCTTTCAAACTTTGTTGAGGATTCCTTCTCTGGTGGAAGTATTGGCCTCAACAAAGAAGATGGCTCCATTGTTAAGGACTCGCCCCATCATCAGTTTCAGACATCCAGCCCGGTTTCTGTGCTGGAAAGCAGCAGCTCCTGCTCAGGAGGGGGAGGGAAGACCATACCACTTAGCCCCAATCATCGTGGGGCTCAACGTGCCCGCAGCAAGCGTCCTCGACCTGCGACCTTTAACCCTCGCCCTGCCATTCAGCTTATCTCCCCAACCTCGTCTGTTACCGAATCACCACAGCCGGTCCTTGTCCCTAAAGCGTCTTCTGACTCTGAGAATTACGCAGAGTCTTCTCCTCTGAAGAAGATGCCAAAACCGGCTGCAGCAGAACATAAGAAGAAAAAGAAGATGAAGCTGTCGCTTCCACTGGGTCCTGTGGAGATGAACCAAAATCCACCCGCACAAGCAGTTAGGAAATGCATGCATTGTGAGATAACAAAGACACCACAATGGAGGGCAGGCCCAATGGGGCCAAAAACCCTATGCAATGCCTGTGGTGTCCGCTACAAGTCAGGCCGGCTCTTCCCAGAATACCGGCCTGCAGCAAGTCCTACGTTTGTCCCCGCATTGCACTCCAATTCTCACAAGAAGGTAATCGAGATGAGGAACAAAGCTTGTGAAAACACTGCAATGACTGCAAGCCCACCAACGGGGACCACCTCCCCACCGGAGCTCATTCCAAATAGCAGTGTTTCATTGGATTATATGTGA 1023 0.5337 MIGPNFMDEIDCGSFFDHIDDLLEFPPEDVSGGLMGGDCNSFPSIWTNASDPLPGPDSVFSGPNSNSNSDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSIGLNKEDGSIVKDSPHHQFQTSSPVSVLESSSSCSGGGGKTIPLSPNHRGAQRARSKRPRPATFNPRPAIQLISPTSSVTESPQPVLVPKASSDSENYAESSPLKKMPKPAAAEHKKKKKMKLSLPLGPVEMNQNPPAQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPALHSNSHKKVIEMRNKACENTAMTASPPTGTTSPPELIPNSSVSLDYM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0624 340 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Vvi13g0624 340 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Vvi13g0624 340 CDD ZnF_GATA 243 290 IPR000679 GO:0006355|GO:0043565
Vvi13g0624 340 MobiDBLite consensus disorder prediction 107 218 - -
Vvi13g0624 340 MobiDBLite consensus disorder prediction 114 140 - -
Vvi13g0624 340 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Vvi13g0624 340 PANTHER GATA TRANSCRIPTION FACTOR 18 317 - -
Vvi13g0624 340 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Vvi13g0624 340 MobiDBLite consensus disorder prediction 169 200 - -
Vvi13g0624 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 301 - -
Vvi13g0624 340 PIRSF Txn_fac_GATA_plant 2 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi13g0624 340 FunFam GATA transcription factor 234 318 - -
Vvi13g0624 340 MobiDBLite consensus disorder prediction 314 340 - -
Vvi13g0624 340 Gene3D - 239 288 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0624 Vvi-Chr13 5760953 5762854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0624 241 334 C2C2-Gata Transcription Factor Family AT3G54810 74.468 4.55e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi13g0624 GATA 5.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0624 - - vvi:100242832 640.958