Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0623 ATGATCAGTCTTATGGATCCCATGAAGGAGCTGGACAAGTGCTTGGATCCTCAATTATGGCATGCCTGTGCAGGAGGAATGGTGCATATGCCATCCCTTAATTCTAGGGTCGTCTACTTCCCTCAGGGCCATGCTGAACACGCCTATGGGAATGTGGATTTTGGGAATCCCCGGATTCCCCCGCTTGTCCTCTGCAGAGTATCTGCTGTAAAATACTTGGCGGATCCAGAGTCAGATGAGGTTTATGCCAAGATAAGGTTGATTCCATTGAGAAACACTGAGGGTGAAACGGAAGATGATGTGTTAATGGGAGGCAATGGAATTGAGGCTCCTGAGAAACCAGCTTCTTTTGCAAAAACCTTGACACAATCTGATGCAAATAATGGTGGAGGTTTCTCCGTCCCTCGTTACTGTGCTGAGACTATCTTTCCACGCTTGGATTATTCAGCAGACCCGCCTGTCCAAACTATCCTTGCAAAGGATGTACATGGTGAGACTTGGAGGTTTCGGCATATCTATAGGGGAACTCCACGACGCCATCTTTTAACAACAGGATGGAGCAACTTTGTAAACAAGAAGAATCTTGTTGCAGGGGACTCGATTGTGTTCTTGAGAGCAGAAAATGGGGATCTCTGTGTTGGAATTCGGCGGGCAAAGAGGGCTGGCTGTGGACCTGAGTCTCCATCTGGTTGGAACCCAGCATCTGGAAATGGTACCTCTCCATATAGGGGATATTCTGGGTTCTTGAGGGAGGATGAGAATAGGCCGATATTAACACATTCCAATGCGGGATTCAGGGGAAAGGGAAGAGTAAGGGCTGAATCTGTTGCTGAAGCTGCAACACTTGCTGCGAATGGCCAGCCCTTTGTTATTGTTTACTATCCACGTGCAAGCACTCCTGAGTTTTGTGTGAAGGCCTCATCTGTGAGAGCGGCAATGCAGATCCAGTGGTGTCCTGGAATGAAGTTCAAAATGGCTTTTGAAACCGATGATTCTTCTCGGATAAGCTGGTTCATGGGAAACATTTCTTCTGTTCACGTTAATGACCCCATTCGCTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTAACATGGGATGAGCCAGATTTACTCCAGAATGTGAAGCGAGTTAACCCCTGGTTGGTTGAATTGGTGTCACACGTGCCCTCTATCCATCTATCCCCCTTCTCACCACCAAGAAAGAAGTTGCGGCTTCAACAACAGTCAGAATTCCCCCTAGTTGGCCAAATTCCAATGCCATCATTTTCCAGCAACGCCCTCAGGCCAAGCAGCCCCTTGTGTTGTATATCTGACAACATTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGACTATCTTCATCAGATCTCCATTTCAACAAACTGCAGTTGGGTCTGTTTCCACTTGGTTTACAGCAGCAGCTTGATCAGACTGCCCCACCTTCCAGTATTCTTAGTGGGAATACCATGAGCAACCATGAGAACAATGAAAATATTTCTTGCTTGCTTACAATTGGAAATTCCACACAGAACTCGAAGAAAAATAATGAAATAAAGGCACCTTATTTCTTCCTCTTTGGTCAACCTATTCTCATTGAGCAGCAGGTTTCTCAGAGCTGCTCTGGTGATACAGCTGGAATCAGTTCATCAGATGGAAATCCAGAGAAAACGCCAAATTTCTCAGATGGTTCTGGATCTGCATTTCACCAGAATGGCCCACAGGAGAGCTCCTCGGATGAAGGGCTCCTCACTTGGTACAAAGATCACCAAAAAACTAATCTTGGCCTGGAGACTGGTCACTGCAAGGTGTTCATGGAATCAGAGGATGTGGGTCGGACTCTTGATCTGTCAATACTTGGTTCATATGAAGAACTCTATAGAAAGTTGGCCAACATGTTTGGCATAGAAAGAGCTGAGATGCTGAGCAATGTACTCTACCGGGATGAGGCGGGCATTGTTAAGCACATTGGAGATGCACCCTTTGGTGAGTTTTTGAAGACAGCAAGAAGGCTAACAATTCTGGCCGATTCGGCAGCAACACCCTAG 2052 0.4688 MISLMDPMKELDKCLDPQLWHACAGGMVHMPSLNSRVVYFPQGHAEHAYGNVDFGNPRIPPLVLCRVSAVKYLADPESDEVYAKIRLIPLRNTEGETEDDVLMGGNGIEAPEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWRFRHIYRGTPRRHLLTTGWSNFVNKKNLVAGDSIVFLRAENGDLCVGIRRAKRAGCGPESPSGWNPASGNGTSPYRGYSGFLREDENRPILTHSNAGFRGKGRVRAESVAEAATLAANGQPFVIVYYPRASTPEFCVKASSVRAAMQIQWCPGMKFKMAFETDDSSRISWFMGNISSVHVNDPIRWPNSPWRLLQVTWDEPDLLQNVKRVNPWLVELVSHVPSIHLSPFSPPRKKLRLQQQSEFPLVGQIPMPSFSSNALRPSSPLCCISDNIPAGIQGARHAQFGLSSSDLHFNKLQLGLFPLGLQQQLDQTAPPSSILSGNTMSNHENNENISCLLTIGNSTQNSKKNNEIKAPYFFLFGQPILIEQQVSQSCSGDTAGISSSDGNPEKTPNFSDGSGSAFHQNGPQESSSDEGLLTWYKDHQKTNLGLETGHCKVFMESEDVGRTLDLSILGSYEELYRKLANMFGIERAEMLSNVLYRDEAGIVKHIGDAPFGEFLKTARRLTILADSAATP* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0623 683 Gene3D - 598 682 - -
Vvi13g0623 683 FunFam Auxin response factor 115 219 - -
Vvi13g0623 683 Gene3D - 317 390 - -
Vvi13g0623 683 SUPERFAMILY DNA-binding pseudobarrel domain 111 222 IPR015300 -
Vvi13g0623 683 SMART B3_2 117 219 IPR003340 GO:0003677
Vvi13g0623 683 CDD B3_DNA 116 217 IPR003340 GO:0003677
Vvi13g0623 683 ProSiteProfiles PB1 domain profile. 600 680 IPR000270 GO:0005515
Vvi13g0623 683 FunFam Auxin response factor 317 390 - -
Vvi13g0623 683 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi13g0623 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi13g0623 683 MobiDBLite consensus disorder prediction 544 582 - -
Vvi13g0623 683 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Vvi13g0623 683 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Vvi13g0623 683 Gene3D - 115 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0623 Vvi-Chr13 5744554 5747220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0623 1 681 B3 DNA Binding Superfamily AT4G30080 61.748 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi13g0623 B3 7.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0623 - - vvi:100265118 1387.47