Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0617 ATGAATAAGCTGTTGATGGAGGAAAATGAACGGCTTCAAAAACAGGTGTCACAGCTAGTATATGAGAATGGATACATGAAGCAACAATTGCAAAATGTAACTGCAACAACTACTGATACAAGATGTGATTCTTTGGTTGCTACTCCTCAACATTCTTCAAGAACTGGAAATAATCCTATTGGGCTCCTCTCAATAGCTGAGGAGGCCATGGGGGAGTTCCTTTCAAAGGCTAAGGGAACTGCTGTTGATTGGGTCCAGATTCCTGGGATGAAGCCTGGTCCGGATTCGGTCGGGACTGTTGCCATTTCCCATAGTTGCAATGGAGTGGCAGCACGAGCCTGCAGTCTTGTATCTTTAGAACCTACAGAGATAATGGAGATCCTCAAAGACCGACAATCTTGGTTCAGAGATTGTCGGAAACTGGAAGTCTTCGCCAAGTTTCCAGCGGGAAATGGGGGAATACTTGAACTGATATACATGCAAGTTTATGCTCCAACTACACTGGCTCCTGCACGTGATTTCTGGACTCTAAGATATACTTCAAGTTTAGAAGATGGCAGCCTTGTGGTATGTGAGAGATCAATGTCTGGGTCTGGTGCTGGCCCAAATCCCTCTACCGCTTCACAATTTGTCAGAGCCAAGATGCTGCCCAGTGGCTATTTGATTCGGCCCTGTGAGGGGGGAGGTTCAATCATTCACATTGTTGACCACCTAGATCTTGAGGCATGGAGTGTACCTGAGGTGCTGCAACCACTTTACAAGTCTTCCAAACTTGTGGCACAGAAGATGACAGTTGCTGCTCTGCACCATATTAGGCAAATAGCTCAGGAAACAAGTGGTGATGTAACACATACTTTGGGCAAGCAGCCTGCTGTTCTGCGAGCTTTTAGACAAAAATTGAGCAGAGGATTCAATGATGCTATCAATGGATTTAATGATGATGGCTGGTCACTGATGCAAATTGATGGTGCTGAAGATTTAATAATATCTGTAAACTCAGCCAAGAACTTGAGCACCATTTCAAATTCGACAGCTGCTCTTTCCTTGCCTGGAGGAATTCTCTGTGTGAAGGCTGCCATGCTACTCCAGAATGTTTCCCCTTCACTGATGGTTCGATTCCTGAGGGAGCACCGTTCTGAGTGGGCTGATTTCAGTGTTGATGCATATGCCGCTGCATCATTGAGAGGTGACTCGTTTGCTTTGCCCGGATTGAGCCCCTCCCAGTTTTCTGGCAACCAAACTACCATGTCTCTTGGCATCACAGCTGAAAATGAGATACTAGAAATAATTCAACTTGAAGGCCATGCTCTCAGCCAAGAAGAGGCTTCTGTTATGTGGAGGAACATTCATCTTTTACAGATTTGTAATGGAGTGGATGATAATGCTGGGGAAGCCTGCTCAGAACTAGTTTTTTCTCCAATTGATGAAATGTTTCCAGATGATGCTCCGATTCTGTCCTCTGGGTTTCGGATCTTGGAGTTGGATGCAAAAACATGTGACAGACAAGATATGTTGGCTGCAAAACGAATGATGAATCTAGCATCCAATCTTGAAGTACGCTCATCCGACGCTACTGGATGCACAGCTTCATCTAGTGACTCTCGCTCAGTGTTGATTATTGCCTTCCAGTTTCTTTTTGAGAGCCATCTTCAGGGAAATGTTGTGACTATGGCTCGACAGTATGCCCGCAATGTGATTTCCTCTGTTCAGAGGGTTGCTATGGCAATAACCCCATCTGGATTGCATGGGAGGCCAAAGTCAACCTCAGGCTCTCCTGAAGCTCTCACCCTTGCTCGTTGGATCTGCCAAAGCTATAGTTTCCATTTAGGAGATCAATTGCTAAAGTCCAATTACCATGGTGGAGACTCGGTGTTGAAACAGCTCTGGCATCATCAGGATGCCATATTATGCTGCTCATTGAAGTTGCACCCCGTTTTCATATTTGCCAACCAAGCAGGGCTTGACATGCTGGAGACTACACTGGTAGCTTTGCAGGATGTTTCACTGGACAAGATATTTGATGAGGCTGGTCGGAAGGCATTATGTAATGTCGTTCCCCAGGTTATGCAGCAGGGTTTTGCCTTGGTACCAGCTGGAATTGGTATGTCAACCATGGGGCGTCATGTTTCATTCGAGCAAGCCATTGCTTGGAAGGTCCTTACTGAAGAAAATACCGTTCACTGCCTCGCCTTTGCCTTCATTAACTGGTCTTTTGTGTAG 2220 0.4572 MNKLLMEENERLQKQVSQLVYENGYMKQQLQNVTATTTDTRCDSLVATPQHSSRTGNNPIGLLSIAEEAMGEFLSKAKGTAVDWVQIPGMKPGPDSVGTVAISHSCNGVAARACSLVSLEPTEIMEILKDRQSWFRDCRKLEVFAKFPAGNGGILELIYMQVYAPTTLAPARDFWTLRYTSSLEDGSLVVCERSMSGSGAGPNPSTASQFVRAKMLPSGYLIRPCEGGGSIIHIVDHLDLEAWSVPEVLQPLYKSSKLVAQKMTVAALHHIRQIAQETSGDVTHTLGKQPAVLRAFRQKLSRGFNDAINGFNDDGWSLMQIDGAEDLIISVNSAKNLSTISNSTAALSLPGGILCVKAAMLLQNVSPSLMVRFLREHRSEWADFSVDAYAAASLRGDSFALPGLSPSQFSGNQTTMSLGITAENEILEIIQLEGHALSQEEASVMWRNIHLLQICNGVDDNAGEACSELVFSPIDEMFPDDAPILSSGFRILELDAKTCDRQDMLAAKRMMNLASNLEVRSSDATGCTASSSDSRSVLIIAFQFLFESHLQGNVVTMARQYARNVISSVQRVAMAITPSGLHGRPKSTSGSPEALTLARWICQSYSFHLGDQLLKSNYHGGDSVLKQLWHHQDAILCCSLKLHPVFIFANQAGLDMLETTLVALQDVSLDKIFDEAGRKALCNVVPQVMQQGFALVPAGIGMSTMGRHVSFEQAIAWKVLTEENTVHCLAFAFINWSFV* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0617 739 Pfam MEKHLA domain 596 738 IPR013978 -
Vvi13g0617 739 Gene3D - 97 285 IPR023393 -
Vvi13g0617 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 739 IPR044830 GO:0003700
Vvi13g0617 739 SUPERFAMILY Bet v1-like 64 276 - -
Vvi13g0617 739 SMART START_1 64 274 IPR002913 GO:0008289
Vvi13g0617 739 Coils Coil 2 22 - -
Vvi13g0617 739 ProSiteProfiles START domain profile. 55 283 IPR002913 GO:0008289
Vvi13g0617 739 Pfam START domain 65 272 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0617 Vvi-Chr13 5643638 5654574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0617 1 739 Homeobox Transcription Factor Family AT5G60690 68.800 0.0 1052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0617 K09338 - vvi:100261558 1466.44