Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0613 ATGACTAAGGACGTTGAGGTTGCGGAGCATGGGTCCTTCTCCGCCAAGGACTATCATGACCCGCCGCCGGCGCCGCTGTTCGACTCAGTTGAGCTCACTAAGTGGTCCTTCTACAGGGCTCTGATTGCGGAGTTCATTGCCACGCTGCTCTTCCTTTACATTACGGTGCTGACAGTCATCGGCTACAAGAGCCAGACTGCCGGGGGTGACCCATGCGGTGGTGTTGGCATTCTGGGCATTGCTTGGTCTTTTGGTGGCATGATCTTTATCCTTGTTTACTGCACTGCCGGCATTTCTGGGGGACACATTAACCCGGCGGTGACCTTTGGGCTGTTCCTGGCCCGGAAGGTGTCGCTGATCCGAGCAATATTGTACATGGTGGCTCAGTGTCTTGGAGCCATTTGCGGTGTGGGTCTCGTCAAAGCCTTCCAATCTGCTTACTATGATCGCTACGGGGGCGGTGCCAACGAGCTCTCCACCGGCTACAGCAAAGGCACCGGCTTGGGCGCTGAGATCATTGGAACTTTTGTCCTTGTCTACACCGTCTTCTCTGCAACTGACCCCAAGAGGAGTGCCAGAGACTCCCATGTTCCTGTTCTGGCACCTCTTCCAATTGGGTTTGCCGTGTTCATGGTTCACTTGGCCACTATTCCTATCACTGGCACCGGTATCAACCCTGCCAGGAGTTTGGGGGCTGCTGTTATCTACAACAATGAGAAGGCCTGGGATGACCAGTGGATCTTTTGGGTTGGACCCTTCATTGGTGCAGCCATTGCAGCCTTCTACCACCAGTTCATATTGAGAGCTGGAGCTGTCAAGGCTCTTGGGTCATTCAGGAGCACCACTCATGTATGA 855 0.5439 MTKDVEVAEHGSFSAKDYHDPPPAPLFDSVELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQTAGGDPCGGVGILGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQSAYYDRYGGGANELSTGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTTHV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0613 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Vvi13g0613 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Vvi13g0613 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Vvi13g0613 284 FunFam Probable aquaporin PIP1-2 24 282 - -
Vvi13g0613 284 NCBIfam MIP family channel protein 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0613 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 273 IPR034294 -
Vvi13g0613 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0613 Vvi-Chr13 5602349 5604821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0613 1 284 Major Intrinsic Protein MIP AT2G37170 83.275 8.60e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0613 K09872 - vvi:100233002 573.163