Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0601 ATGAAATTCCCACTTGCATGCTCAGAGTGCTTCTATCCTTCTTCTGACGACCTCCATGACAACAACGGAGGACGAGTCATAAAATCAGGTCTACCGACACTCCAAAACGCTCACGCTTTCACATACAATGAAATCAAAATTGCCACCGGTGGCTTCCGCTCATCAGATAAGATCGGCCAAGGGGGATTCGGATCTGTTTATAAGGGAAGACTTCAAGATGGAACAGTGGTGGCAGTGAAGGTTCTTTCAGCAGAATCAAAGCAAGGGGACAGGGAGTTTATGTCTGAGATGGCTTCAATATCTAATATCAACCATGAAAATCTTGTCAAGCTGCATGGTGGTTGCGTCCATGGAGCCCGTAGAATGCTCGTTTACGACTATATGCAGAACAATAGCCTTTCTCATACCTTACTCCGTGGGGAGAAAAGAAGAGCTAAATTTAGCTGGAAAACGAGAAGGGAAATTTGCTTGGGGATTGCTCGAGGGCTTGCTTATATCCACGAGGACATTACACCCCACGTAGTTCACCGGGACATTAAAGCTAGCAATATACTTCTTGATGGAGATTTTACCCCAAAAATTTCAGATTTTGGCCTCTCCAAACTCTTTTATACCAACATCACTCACATTACCACACGGGTTGCCGGGACATTAGGCTATCTTGCTCCGGAATATGCCTTAAGTGGGCATTTGACCAGAAAATCTGATGTATATAGCTTTGGAGTGCTGATTTTAGAGATTGTGAGCGGAAGAACCGCTATCGACTTTGACTTGGACCTGGGAGAGCATTACCTCGTCCAGAAGGCCTGGGAACTGTACAAGACCAAGAAGCTCGATCAGCTGGTGGACCCAGTGATGAGGGGCGACATTACAGCAAAGGAAGCCGTCCGCTTCCTCAGGGTGGGGCTACTATGCGTACAAGAGAAATGTGATCGACGGCCCAAAATCTCCAAAGCGATGAGCCTCATGTCCGATGACGAAATCAACCTGGATGATCTCCTAATATCGCAGCCGGGAATCATCACAGATATCATGGACGTGAAACTTGGCAGAAGACGGTCGACGTCTCAGGGCATCACCAGCACCCCAAGTCACCGGTTGTACAATTTTTGA 1113 0.4699 MKFPLACSECFYPSSDDLHDNNGGRVIKSGLPTLQNAHAFTYNEIKIATGGFRSSDKIGQGGFGSVYKGRLQDGTVVAVKVLSAESKQGDREFMSEMASISNINHENLVKLHGGCVHGARRMLVYDYMQNNSLSHTLLRGEKRRAKFSWKTRREICLGIARGLAYIHEDITPHVVHRDIKASNILLDGDFTPKISDFGLSKLFYTNITHITTRVAGTLGYLAPEYALSGHLTRKSDVYSFGVLILEIVSGRTAIDFDLDLGEHYLVQKAWELYKTKKLDQLVDPVMRGDITAKEAVRFLRVGLLCVQEKCDRRPKISKAMSLMSDDEINLDDLLISQPGIITDIMDVKLGRRRSTSQGITSTPSHRLYNF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0601 370 Gene3D Phosphorylase Kinase; domain 1 27 127 - -
Vvi13g0601 370 SMART serkin_6 52 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0601 370 SUPERFAMILY Protein kinase-like (PK-like) 36 325 IPR011009 -
Vvi13g0601 370 Pfam Protein kinase domain 53 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0601 370 CDD STKc_IRAK 58 317 - -
Vvi13g0601 370 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Vvi13g0601 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 355 - -
Vvi13g0601 370 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 128 327 - -
Vvi13g0601 370 ProSiteProfiles Protein kinase domain profile. 52 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0601 370 FunFam Serine/threonine-protein kinase receptor 25 127 - -
Vvi13g0601 370 Gene3D Transferase(Phosphotransferase) domain 1 128 333 - -
Vvi13g0601 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0601 Vvi-Chr13 5455570 5458524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0601 38 343 Receptor kinase-like Gene Family AT1G56120 49.511 2.20e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi13g0601 Pkinase 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0601 - - vvi:100253059 743.421