Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0600 ATGGCCCCAATTGCAGCTGCATTCGGTGACAATGGTTTCTTTTGCGCCATTGATGCGGGTGGCAAGCAAGAGGTCATATGTTGGCAAAGGAACAAAAACGAGTCCTCGTCTTTGTCATCGCCGTATATTAGTTCTCTTCCTCCAATGGCGTCTCTCTCGGGTGGCGAGGGGTTCATGTGCGGTATTACATCGAACACTTCTCAGGCCTATTGCTGGGACTTGTCAAATTCAGTTAGTGATGGTGGGGTTGCTTGCTGGGGTCCCAAATCTGGGACTTTAGGCGTGTCAGCTGTTTCTGAGGATTTTGAAACCTTAGCTTCAGGGAGGGGTTCAGTTTGTGGGATTTCTACTGTGTCTGGTGAAGTAGAATGCTGGGGTGATGCTGATGAATTTGGAGCTCCACCGGTGGGGACTAATTTTGTGGGTTTATCAGCCGGCGCCAGTCACTTCTGCGGGGTTCTAAAGGATGATCATGAAGTCCAATGTTGGGGGAACATTGATGGTGCAGTGGTCCCAAAGGGATCTGGGTTTATTGCAATTGCATCCTCTGATTTCACCATATGTGGTGTTAGAGAAGTTGATCTGATTCTTGATTGCTGGGGTGTTCATTTGCAGTCTACTCAGGATTATAATCCTCCTTTGCAGTTATGCAGTCCAGGAGTTTGTTCATCGGGTGGATGTGGCGATGGCAAATTTGCATTTAACGCAAGCATACTCAATGAGCCGGACTTGATGAGCTTGTGCGTTAGAAAGGATTTGAAAATCTGCTTGCCTTGTGGTTCAAATTGTTCTGAAGGCTTTTTCCCTTCTAGTGTGTGTACTGAGAATGCAGATAGGATGTGCATTGCTTGTTCTCTCTGCCAGAACAGCTCTTGTTGGGATGTTTGTGGTCTTCCTCCTTCATCGGATATTTCGCCTCAGGAGCGGCATGAAATGAAGAAACTAATCCTCATTATTGGATCATCTGCATTGGGTTCCATACTAGTTTTGTCTCTGTGTTGTCTTCTTCCCAGGATGATTGAGTCTAAGAATGAAGAGAAGGAGAAAAAATGGTGCATCTCTTGTGTAAGCAAGCCAGGGGTGGAGGCTGACCCCAGCCCTGATCCACAAACCCCTCTCCCTGTGACCCCATGTGTTGGAACAACACAGGTGTTCAGGCTCTCGGAGCTAAAAGACGCTACAAATGGTTTCAAGGAGTTCAATGAGCTTGGTCGAGGAAGCTACGGCTTTGTCTACAAAGCGGTTCTTGCAGATGGTAGGCAAGTAGCAGTCAAGAGGGCTAATGCTGCTACCATAATTCATACCAACAGCCGAGACTTCGAAGCAGAACTGGAAATTCTATGCAATGTTAGGCATAACAATATTGTGAACTTGTTGGGTTATTGCGCTGAAATGGGGGAGAGGCTATTAGTCTACGAATTCATGCCTCATGGAACGCTGCACGACCATCTCCACGAGGAGCTCTCTCCCCTGAATTGGAACCTGAGGTTGAAGATTTCATCGCAGGCGGCTAGAGGGCTCGAGTACCTCCACAAGGAAGCCACACCTCCAATTGTTCACAGGGATGTGAAGACCTCAAACATTCTTTTGGACTCTGAGTGGGGAGCAAGAATAGCAGACTTCGGGCTTTTGAGTGTTAATGACAGGTACTTAAATGGAGGTATGGAGAGTGATGTCTACAATTTTGGAATTGTTCTGTTAGAGATTTTGAGTGGAAGAAAAGCTTATGACAGGGATTATACACCTCCAGGAATTGTTGAATGGGCAGTTCCTTTGATAAGGCAGGGCAAGGCAGCTGCCATTGTAGACCACAATGTTCCTCTGCCAAGAAATGTAGAACCCCTTCTGAAGCTTGCGGACATAGCAGAGCTTGCATTGAAGGAAAATCCTAATGAACGTCCTACCATGCCTGAGGTGGTGGTCTTGTTGGATCAGATTCTGAAGACTGGATTGATCTTTTAA 1962 0.4669 MAPIAAAFGDNGFFCAIDAGGKQEVICWQRNKNESSSLSSPYISSLPPMASLSGGEGFMCGITSNTSQAYCWDLSNSVSDGGVACWGPKSGTLGVSAVSEDFETLASGRGSVCGISTVSGEVECWGDADEFGAPPVGTNFVGLSAGASHFCGVLKDDHEVQCWGNIDGAVVPKGSGFIAIASSDFTICGVREVDLILDCWGVHLQSTQDYNPPLQLCSPGVCSSGGCGDGKFAFNASILNEPDLMSLCVRKDLKICLPCGSNCSEGFFPSSVCTENADRMCIACSLCQNSSCWDVCGLPPSSDISPQERHEMKKLILIIGSSALGSILVLSLCCLLPRMIESKNEEKEKKWCISCVSKPGVEADPSPDPQTPLPVTPCVGTTQVFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHTNSRDFEAELEILCNVRHNNIVNLLGYCAEMGERLLVYEFMPHGTLHDHLHEELSPLNWNLRLKISSQAARGLEYLHKEATPPIVHRDVKTSNILLDSEWGARIADFGLLSVNDRYLNGGMESDVYNFGIVLLEILSGRKAYDRDYTPPGIVEWAVPLIRQGKAAAIVDHNVPLPRNVEPLLKLADIAELALKENPNERPTMPEVVVLLDQILKTGLIF* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0600 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Vvi13g0600 653 FunFam serine/threonine-protein kinase-like protein CCR1 368 474 - -
Vvi13g0600 653 Gene3D Phosphorylase Kinase; domain 1 373 474 - -
Vvi13g0600 653 FunFam Serine/threonine-protein kinase-like protein CCR1 475 551 - -
Vvi13g0600 653 SUPERFAMILY RCC1/BLIP-II 10 202 IPR009091 -
Vvi13g0600 653 ProSiteProfiles Protein kinase domain profile. 397 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0600 653 ProSitePatterns Protein kinases ATP-binding region signature. 403 425 IPR017441 GO:0005524
Vvi13g0600 653 Gene3D Transferase(Phosphotransferase) domain 1 551 650 - -
Vvi13g0600 653 Gene3D Transferase(Phosphotransferase) domain 1 475 550 - -
Vvi13g0600 653 SMART serkin_6 397 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0600 653 SUPERFAMILY Protein kinase-like (PK-like) 371 643 IPR011009 -
Vvi13g0600 653 FunFam Serine/threonine-protein kinase-like protein CCR1 552 650 - -
Vvi13g0600 653 PANTHER OS01G0750732 PROTEIN 225 648 - -
Vvi13g0600 653 Gene3D - 2 215 IPR009091 -
Vvi13g0600 653 Pfam Protein tyrosine and serine/threonine kinase 401 546 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0600 Vvi-Chr13 5432137 5434359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0600 49 647 Receptor kinase-like Gene Family AT3G59420 33.844 2.21e-96 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi13g0600 PK_Tyr_Ser-Thr 4.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0600 - - vvi:100242791 1165.6