Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0599 ATGGCATCCACTGTGCTGAGAAGCTGCGGCGTCGCCGCTGTTGCCCCATCGCTGCTATCTTCTTCCAAGTCTAAATTCGCCACCTCGCTGCCACTCCCCAATGCTGCCGCCGGCTCTGCCCGGGTCACCATGTCTGCCGACTGGATGCCCGGCCAGCCCCGCCCACCCTACCTTGATGGCTCCGCCCCTGGTGACTTTGGATTTGACCCACTTCGGCTTGGTGAAGTCCCAGAGAATCTGGAGAGATATAAGGAATCCGAACTTATCCACTGCAGATGGGCTATGCTCGCTGTTCCGGGAGTCCTAGTGCCAGAAGCCTTGGGCTTAGGCAACTGGGTACAGGCTCAAGAGTGGGCAGCAATTCCAGGAGGCCAAGCCACCTACTTGGGCAACCCAGTCCCATGGGGCAACCTCCCGACAATTTTGGCGATCGAATTCCTGGCCATTGCCTTTGTTGAGCACCAACGCAGCATGGAGAAGGACACCGAGAAGAAGAAGTACCCTGGTGGCGCTTTCGACCCATTAGGCTACTCCAAGGACCCTGTCAAGTTCGAGGAATACAAAGTGAAAGAGATCAAAAATGGCCGCCTTGCAATTTTGGCGTTCGTCGGGTTCTGCGTCCAACAGTCGGCTTATCCCGGAACAGGACCATTGGAGAATCTGGCTTCTCACTTGGCAGACCCATGGCACAACAACATTGGCGATGTCATCATCCCCAGATCAATTATGCCTTGA 735 0.5578 MASTVLRSCGVAAVAPSLLSSSKSKFATSLPLPNAAAGSARVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDVIIPRSIMP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0599 244 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Vvi13g0599 244 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 32 235 IPR001344 GO:0009765|GO:0016020
Vvi13g0599 244 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
Vvi13g0599 244 SUPERFAMILY Chlorophyll a-b binding protein 41 238 - -
Vvi13g0599 244 FunFam Chlorophyll a-b binding protein, chloroplastic 49 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0599 Vvi-Chr13 5428886 5430010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0599 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 83.249 1.49e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0599 K08907 - vvi:100263275 495.352