Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0595 ATGATTGGTCCTCTCCAGATGAGGTTGGTGTTTCACCTTCCTTTTCTTCTAACTTTTGAAGCCATGGGGCATCGATACTTTACAAACTCATTCCAAATGTCTGTGGCAGACCAAGATCAGAACCAATATCATATGGATGCATATCAGTCTTATATTCATTCAGGAAGGGCTGTTGATCCTGTGTATGGATCTTATGTTCATCAAATGGAGAATGCACTCACAAGTGGGGTAAGCAGTGCCTTTCCGCGGAATCTGAATTGCGGAACCAATGAACATTCTTTATCAAGTTTCAGCATGCAAAGGCCGTGTTTTCAAGCAGCTGTCCCAGGTCCATCTCATGATCCATTCTCACACTTGTCAGCTGCTGGAACCTTTTATCGGACTCAGGAGAATAATGCTAGCCATGCTCATTCTACTTACTACAACAGAAGCACTATTCATGAAGTTGAAGGTGGTTCACAAGATCCTGCAGTGCAAAACAGCAGAGGACCATTCAAAAGAAAAAGCCCCAGCATTTCTATAGCCTATGAGAGGGGCATTCCAAGCAGATTTTATGATGCAGGAAGTTCCTCTGGTTTTTCTGAATTTCATCTGGACAAACCAACTTTAGATTATCAAAACTACTTTTATGGTCCTGGGTTATCTCATTATGGGGCCAGTAGTCTCTCAATTTCTGGTGAAGCATCTCTAAGGAATGTGAGAAGACGATCTAGATTTGAGTGGGAACCCAACAGAACAACTGGTCATTTATCGAGCTATTCTTCTCATTATTACTGTCCAACAACCAATCTGATAAACCATTCTAGTAGAGTAGACCTTGCAAATTTAACAGCCAATTCCACCACTTATGAAAGGAGCCATACTGCTGTGCCTCCAGCTGGTTATGGAAGATTTTTAAATTCAGAAACAAATGGCTTGAGCCATGAGACAGATAGGTTTGTTGTGGGAAGAAGTACTGTGGATATCAGTGGGTACCATCATGGCTCTGTTTCAAGCAGATTCCCCATTTCCCTTCCACAATATCTTCACGGTCTGTCTGGTCAGTCTGTGAGGGAAGGCCACAGTAGCTATTCTCAAAGATTTATACCTTCATACAGGAGTGGTCTTAGCTATCCCCACTTGGGACATGAAGCAGCTCACTCTGAAAATGGTTTGCAGTTCCCCTCAGAAACTTTTTCTTCCAGATATCCAAGGCCATCAGCTGCCAGTGGATGGCGTAACAGTTACAGGAATGAAAGATCAAGGATTGCTAGTGAGAGATACCAATCACTTTCTAATGCAGCAGACACCCATGCTCAAATGGAGTCTGAGGCTGTCATAATGGTGGACAGCTCATCCTTGTATGGTTCCAGAAATTTGTTTGATCAGTATGGGGACATGAGGCTGGACATTGATGACATGAGTTATGAGGAACTTCTTGCTCTAGGAGAAAGCATTGGAAATGTCAGCACAGGCTTGTCTGAAGATATGGTCTCAAAGTGTTTGACAAAAACAACATACCATTCATCAGATCAAAACCAGGAGGAAGCAATGTGCACAATATGCCTTGAGGAATACAAAAGCAAGGAAGAAGTAGGGAGAATGAAGAACTGTGGTCATGATTACCATGTGGGCTGCATCAGGAAATGGTTGTCACTGAAGAATTTCTGCGCCATTTGCAAAGCACCAGCTCTTGCAGATGGTTTGAAGGAGGAATGA 1698 0.4287 MIGPLQMRLVFHLPFLLTFEAMGHRYFTNSFQMSVADQDQNQYHMDAYQSYIHSGRAVDPVYGSYVHQMENALTSGVSSAFPRNLNCGTNEHSLSSFSMQRPCFQAAVPGPSHDPFSHLSAAGTFYRTQENNASHAHSTYYNRSTIHEVEGGSQDPAVQNSRGPFKRKSPSISIAYERGIPSRFYDAGSSSGFSEFHLDKPTLDYQNYFYGPGLSHYGASSLSISGEASLRNVRRRSRFEWEPNRTTGHLSSYSSHYYCPTTNLINHSSRVDLANLTANSTTYERSHTAVPPAGYGRFLNSETNGLSHETDRFVVGRSTVDISGYHHGSVSSRFPISLPQYLHGLSGQSVREGHSSYSQRFIPSYRSGLSYPHLGHEAAHSENGLQFPSETFSSRYPRPSAASGWRNSYRNERSRIASERYQSLSNAADTHAQMESEAVIMVDSSSLYGSRNLFDQYGDMRLDIDDMSYEELLALGESIGNVSTGLSEDMVSKCLTKTTYHSSDQNQEEAMCTICLEEYKSKEEVGRMKNCGHDYHVGCIRKWLSLKNFCAICKAPALADGLKEE* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0595 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 558 IPR013083 -
Vvi13g0595 565 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Vvi13g0595 565 Pfam Ring finger domain 511 554 IPR001841 -
Vvi13g0595 565 CDD RING-H2_RNF24-like 510 557 - -
Vvi13g0595 565 SUPERFAMILY RING/U-box 502 557 - -
Vvi13g0595 565 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 129 558 IPR045191 GO:0061630
Vvi13g0595 565 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 477 558 - -
Vvi13g0595 565 SMART ring_2 512 553 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0595 Vvi-Chr13 5377089 5389168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0595 22 563 C3H Transcription Factor Family AT2G37150 36.250 5.44e-72 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0595 - - vvi:100249661 1120.53