Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0589 ATGGGGGGAAGAGAATGTCACCCATCTTTTTCCTCTCTCTTCTTCTGCGTTTTGGGTTTTTTCATTCTGCTTGTTTCCTCCGGCGCCACGGCCGGCAACCGGGAAGATCAGGTGCGGGACAGGATCGTCAAGCTACCTGGGGAGCCGCCCAATGTGGGCTTCTCTCAGTACTCGGGCTACATCACGGTGGACCCAAGGGCGGGGCGGGCTCTGTTCTACTGGTTGATTGAGGCCCCTAAGAGCCGTGGGCCAGCATCCAGGCCGCTTATCTTGTGGCTGAATGGTGGGCCAGGGTGCTCTTCTGTGGCCTACGGGGCCTCAGAGGAGGTGGGTCCCTTTAGGGTGCGCCCGGATGGAAAGACTCTCCATTTGAACCCGTATGCATGGAATGCAGAGGCGAATTTGCTTTTCCTGGATTCACCAGCTGGGGTTGGTTTCTCTTACTCAAATACCTCATCTGATCTCCCAAATGTTGGTGACAAGAGAACAGCAAAAGACGCCTACAAATTTCTCATCAATTGGCTTCAGAGGTTCCCTCAATACAAACACAGGCCTTTCTACATTGCCGGAGAAAGCTATGCAGGTCATTACATTCCTGAGCTGTCTCAAATCATCGTCCAACGCAACAAGGGGATGAAGAATCCTGCCATCAATTTCAAAGGTTTCTTACTGGGGAATCCGCTGATCGATGATTATTACGATAACAAGGGGACACATGAGTTCTGGTGGAGCCATGGTCTGATCTCAGATTCCACGTACGAGGCTCTGAAAGAGGCCTGCGCCAACGACACGTTTCTGTTCCCAAAGGACAAATGTAACAATGCTCTTACCGGCGCTTACAAAGAGTTTGGAGACATCGATCCCTATAACATTTACAGTGGTCCTTGCCGAGAAGTTGCCACCCTTGGCAACAACTCAAAGCTTCCACTACCATGGACTTTCAGAGGGAATGATGAGTGCATCGTGAGGTATACAAGAAAGTACATGAATCGTGGAGAGGTGCAGAAGGCCTTCCATGCAAATGTTACTCATCTTCCTTATTCATGGGCGACTTGCAGTTCTATAGTAAGGAGGAACTGGAGTGATTCTCCCAAATCCATGCTTCCCATCTTTAAACAGCTCATATCAGCTGGTATCAGGATTTGGCTCTTCAGCGGGGACACCGATGCTGTTTTGCCATTGACTGCAACCCGGTATTCGATCAAGGCTCTAAAGCTCAAAACAATCACAAATTGGCACGCTTGGTACGATGACAAACAAGAGGTTGGTGGGTGGAGCCAAGTGTACGAGGGTCTCACCTTTACAACAGTCAGAGGAGCAGGGCATGAGGTTCCACTGGGTCAACCCCGCCGAGCCCTCATACTACTTGGGCATTTCTTAAATAATAAGCCCATGCCTGCTGCACCGACTTTGTTTTAG 1419 0.5018 MGGRECHPSFSSLFFCVLGFFILLVSSGATAGNREDQVRDRIVKLPGEPPNVGFSQYSGYITVDPRAGRALFYWLIEAPKSRGPASRPLILWLNGGPGCSSVAYGASEEVGPFRVRPDGKTLHLNPYAWNAEANLLFLDSPAGVGFSYSNTSSDLPNVGDKRTAKDAYKFLINWLQRFPQYKHRPFYIAGESYAGHYIPELSQIIVQRNKGMKNPAINFKGFLLGNPLIDDYYDNKGTHEFWWSHGLISDSTYEALKEACANDTFLFPKDKCNNALTGAYKEFGDIDPYNIYSGPCREVATLGNNSKLPLPWTFRGNDECIVRYTRKYMNRGEVQKAFHANVTHLPYSWATCSSIVRRNWSDSPKSMLPIFKQLISAGIRIWLFSGDTDAVLPLTATRYSIKALKLKTITNWHAWYDDKQEVGGWSQVYEGLTFTTVRGAGHEVPLGQPRRALILLGHFLNNKPMPAAPTLF* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0589 472 FunFam Carboxypeptidase 367 462 - -
Vvi13g0589 472 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Vvi13g0589 472 Pfam Serine carboxypeptidase 46 462 IPR001563 GO:0004185|GO:0006508
Vvi13g0589 472 Gene3D - 367 461 - -
Vvi13g0589 472 SUPERFAMILY alpha/beta-Hydrolases 39 466 IPR029058 -
Vvi13g0589 472 Gene3D - 320 356 - -
Vvi13g0589 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 449 IPR001563 GO:0004185|GO:0006508
Vvi13g0589 472 FunFam Carboxypeptidase 319 465 - -
Vvi13g0589 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Vvi13g0589 472 Gene3D alpha/beta hydrolase 37 298 IPR029058 -
Vvi13g0589 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Vvi13g0589 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Vvi13g0589 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Vvi13g0589 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Vvi13g0589 472 FunFam Carboxypeptidase 36 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0589 Vvi-Chr13 5307500 5309819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0589 309 465 Calmodulin-binding Proteins AT2G22960 24.684 2.47e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0589 K16297 - vvi:100256543 995.342