Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0588 ATGGGTCATTATGTATCCGCCGTTATCTTTTTCTTCTTCCTCTTTGTGGGTTTGTGTACTTCTTCTTATCTTGAAGATCAAGAGAGAGATAGGATCACCGAGTTGCCGGGTCAGCCAAAGAACATTGGCTTCGCTCAGTACTCTGGGTATGTGACAGTGAATAAACAGGCTGGGAGGGCATTGTTTTACTGGTTGGTTCAGTCACCAGCGAGTCGTGGAGCTGAGTCGAGACCACTCGTGCTGTGGCTCAATGGAGGCCCCGGGTGTTCTTCTGTTGCCTATGGAGCAGCTGAAGAGATCGGACCTTTTCGAATTAGGCCTGATGGGAAGACCCTTTTCATCAATCCTTACGCTTGGAACAATCTGGCAAATTTGCTATTCCTTGAATCTCCAGCTGGAGTAGGTTTTTCATATTCCAATACCACTTCAGATTTGTATACTGCAGGGGACCAGAGAACAGCTGAAGATGCATATACATTTCTCATCAATTGGTTTGAAAGGTTTCCTCAATACAAGCACAGAGATTTTTACATTGCTGGAGAGAGTTATGCAGGCCATTATGTTCCTCAACTGTCTCAAATTGTCTATCGACGAAACAAGGGAATTCAGAATCCGGTTGTTAATTTCAAGGGTTTCTTGGTGGGCAATGCTGTTACTGATGATTATCATGATTATATTGGCACGTTTGAGTACTGGTGGACCCATGGTTTGATTTCGGATTCCACCTATAAAATCCTTAGAGTTGCCTGTGACCTTGGTTCTTCCATGCATCCATCGAGTGAATGTACCAAGGCCCTGAATCTTGCAGAAGCAGAGCAGGGAAATATTGATCCATATAGCATTTTCACACGTCCTTGTAATGACACTTCATCACTGAGGCGCAACTTAAGGGGCCATTATCCATGGATGTCAAGAGCATATGATCCCTGCACTGAGAGGTATTCAGAAGTGTACTTCAATCTGCCAGAAGTGCAGACAGCACTCCATGCCAATGTAACCCAAGTCTCCTATCCATGGAGAACATGCAGCAATATTGTTGGAATCTACTGGGCCGATTCTCCATTATCCATGCTTCCAATTTATCAAGAACTCATAGCTGCCGGCCTAAGGATATGGGTATTTAGCGGAGACACTGATGCAGTGGTTCCCGTTACTGCAACTCGATACTCCATTGATGCTCTGAAGCTTCCAACCATTACCAACTGGTACGCATGGTACGACAACCACAAGGTTGGTGGATGGAGCCAAGTATACAAAGGGCTGACATTTGTAACAGTAACTGGAGCAGGACATGAGGTTCCACTTCACCGCCCTAGACAAGCTTATATTCTATTCAGATCATTCTTAGAGAACAAGCCCATGCCAAGCTGA 1371 0.45 MGHYVSAVIFFFFLFVGLCTSSYLEDQERDRITELPGQPKNIGFAQYSGYVTVNKQAGRALFYWLVQSPASRGAESRPLVLWLNGGPGCSSVAYGAAEEIGPFRIRPDGKTLFINPYAWNNLANLLFLESPAGVGFSYSNTTSDLYTAGDQRTAEDAYTFLINWFERFPQYKHRDFYIAGESYAGHYVPQLSQIVYRRNKGIQNPVVNFKGFLVGNAVTDDYHDYIGTFEYWWTHGLISDSTYKILRVACDLGSSMHPSSECTKALNLAEAEQGNIDPYSIFTRPCNDTSSLRRNLRGHYPWMSRAYDPCTERYSEVYFNLPEVQTALHANVTQVSYPWRTCSNIVGIYWADSPLSMLPIYQELIAAGLRIWVFSGDTDAVVPVTATRYSIDALKLPTITNWYAWYDNHKVGGWSQVYKGLTFVTVTGAGHEVPLHRPRQAYILFRSFLENKPMPS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0588 456 Gene3D - 357 450 - -
Vvi13g0588 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 438 IPR001563 GO:0004185|GO:0006508
Vvi13g0588 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Vvi13g0588 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vvi13g0588 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Vvi13g0588 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Vvi13g0588 456 SUPERFAMILY alpha/beta-Hydrolases 27 454 IPR029058 -
Vvi13g0588 456 Gene3D alpha/beta hydrolase 26 288 IPR029058 -
Vvi13g0588 456 FunFam Carboxypeptidase 307 454 - -
Vvi13g0588 456 ProSitePatterns Serine carboxypeptidases, histidine active site. 421 438 IPR033124 GO:0004185
Vvi13g0588 456 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Vvi13g0588 456 Gene3D - 310 346 - -
Vvi13g0588 456 FunFam Carboxypeptidase 26 288 - -
Vvi13g0588 456 FunFam Carboxypeptidase 357 451 - -
Vvi13g0588 456 Pfam Serine carboxypeptidase 36 451 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0588 Vvi-Chr13 5302096 5305929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0588 320 454 Calmodulin-binding Proteins AT2G22960 27.941 8.17e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0588 K16297 - vvi:100251399 959.518