Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0586 ATGCCGCCAGAACCACTGCCTTGGGATCGGAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCGGAGTCTTTAGGGTTCTCTGCAAGATGGAGGGACTCGCATCAGGGTTCTCGGGAGTTTGCTCGTTGGGGATCGGCGGAAGTTCGCCGCCCTCCAGGCCATGGCAAGCAAGGAGGCTGGCACATCTTTCCTGAAGAATCAGGCCATGGTTTTGTACCTTCCCGGTCTAGTGATAAGATGGTAGAAGACGAAAATTCTAGGCCATTCACAACTCGTGGAGACGGGAATGGAAAATACAGCCGGAACAACAGGGAAATTAGAGGATCTTTTAGCCAGAAAGATTGGAAAGGTCATCCTTTGGAAACAGGCAATGCATCTCCAAACATGTCGGGAAGGTCTCTTGCTATAAATGATCAGAGGTCAGTCGACGATATGCTAATTCATTCTGATTTTGTAAACGGATGGGATCAACTTCAGTTGAAAGACCAACATGATAAGATGGGTAGTGTCAATGGGTTAGGCACAGGACAGAGAGCTGAGAGAGAGAACTCGTTGAGCTCTATTGATTGGAAGCCTCTAAAATGGACTCGGTCTGGAAGCTTGTCTTCACGGGGTTCTGGTTTCAGCCATTCAAGTAGCTCGAAGAGCATGGGGGTAGATTCTAATGAAGCCAGAGGAGACTTGCAGCCCAGAAATGTGACCCCCGTCCAGTCTCCTTCAGGGGATGCTGTTGCCTGTGTGGCATCTACTGCACCATCAGAAGAGACTTCTTCTAGGAAGAAGCCACGTCTTGGATGGGGGGAGGGGCTGGCAAAGTACGAGAGGAAGAAGGTTGAAGGTCCGGATGAAAGTGTGAACAAAAATGGCATTGTCTTCTGCACCAGTAATGGAGAGTCTACACATTCTCTCAACTCAAACTTGGCTGACAAGAGCCCTAGAGTTATGGGTTTCTCAGATTGTGCATCTCCGGCAACTCCATCTTCTGTTGCTTGTAGTTCTTCACCAGGTATGGAGGAAAAATCATTTAGCAAGGCTGGAAATGTTGATAATGATACTAGTACTTTAAGTGGTTCTCCTGGTCCTGTGTCTCTGAATCATCTTGATGGATTCTCTTTTATTTTAGAGAGTTTGGAGCCTAATCAAATAGCTAATTTGGGGTTTTCACCTATTGAGTTGCTGCAATCTGATGATCCAAGTTCAGTGGATTCTAATTTTATGAGATCTACTGCAATGAGTAAGTTGCTAATATGGAAAGGTGATATTTCAAAGTCCCTGGAGATGACTGAATCTGAAATTGATACACTTGAAAATGAACTCAAGTCATTGAAATCTGGGTCTGGAAGCAGTTGTCCTTGCCCAGCAGCTTCTAGCTCGTTTCCTGTGGAAGGTAAAGCAAAACCTTGTGAAGAGCAAGGAGCTGCCTCCAACCTAATCCTTAGGCCTGCTCCATTGCAAATTGTTCCGCCTGGTGATATGATGACAGATAAAACACTACTTGGTAGTGATGCCATGGAAGATGCTCATGCTGAAGTTAAAGATGAGGATATTGATAGTCCTGGAACTGCTACATCAAAATTTGTTGAACCACCATGTTTGGTGAAGACCGCTTCTCCATCTGATATGGTAATACAAGGTGAATGTTCTGGGAATTTGAAAATAACAAGGTCCACAAACATGGAAGTTGAACTTTTGGTCTCTGGTCCAAATGTGGAAGAGACAGGCATATCTACTAGTGGAGGTGATAGCAGGTTGCTTGTTGAGAGTAAAACTGGTGCCCGTGTTTCAGGTGACATGGGTGTACTTGATGATGAGGAGGATAAGATATATAATTTAATATTGGCTTCCAATAAGGATTGTGCAAATAGAGCTTCTGAAGTATTTAATAAGCTATTGCCACAGAATCAGTGTCAAAATGATATTTTAGGAGCTGCCAACTTCGCATGCAGACAGAATGATTCATTGATTAAACAAAAATTTGCAATGAGAAAGCGGTTCTTAAGATTCAAGGAGAAAGTTATTACACTTAAGTTTAGAGTCTCTCAGCATGTGTGGAAGGAAGATATGCGCTTGCTTTCTATTAGGAAATATCGTGCAAAATCTCAAAAGAAGTTTGAATTAAGCTTGAGGACATCACATTGTGGGTATCAGAAGCATCGGTCTTCCATTCGCTCTCGCTTCTCGTCTCCTGGGAATTTGAGTCCTGTCCCTACAGCTGAGATGATAAATTATACAAGCAAGATGCTTTCCGAATCCCAGATGAAGCTTTGCAGGAACATATTGAAGATGCCAGCTTTGATCTTGGATAAGAAGGAAAAGACAGCATCAAGATTTATTTCTAGTAATGGATTAGTTGAAGATCCATGCGCTGTTGAGAATGAAAGGACTATGATCAACCCTTGGACAGCAGAAGAGAAGGAAATTTTCATGGATAAGTTGGCCATCTTTGGGAAAGAATTCAAAAAGATTGCTTCTTTCCTTGATCACAAGACTACTGCTGATTGTGTCGAATTCTACTATAAAAACCACAAATCAGATTGTTTTGAGAAAACAAAGAAGAAGCTAGAGCTTAGAAAGCAAGGGAAGTCCTTATCTGCAACTACCTATTTGGTGACATCAGGGAAAAAATGGAATCGTGAGATGAATGCTGCCTCCCTTGATATGCTGGGTGCAGCTTCAGTGATGGCAGCTCGTGCTGGTGACAGTATGGAAAATCTGCAGACTTGCCCTGGAAAGTTCCTTTTAGGAGCTCACCATGACTATAGAACACCACATGGTGACAATGGTGTCGTAGAACGGTCTAGCAGTTATGATATTATTCGTAATGAGAGGGAAACTGTGGCTGCTGATGTTTTGGCTGGTATCTGTGGTTCCCTGTCATCAGAGGCAATGAGTTCTTGTATCACAAGTTCTCTTGATCCTGGAGAAGGATATCGTGAGTTGAGGCAAAAAGTGGGTTCTGGAGTGAAACGGCCTTTGACTCCTGAGGTTACACAGAGTATTGATGAGGAGACCTGTTCCGATGAGAGTTGTGGAGAGATGGATCCTGCTGATTGGACGGATGAGGAGAAATGTATCTTTGTGCAGGCAGTATCATCCTATGGTAAGGATTTTGCAAAGATATCACGATGTGTCAGAACAAGGTCCAGGGATCAATGCAAGGTCTTCTTTAGCAAGGCTCGTAAGTGCCTTGGATTAGATCTGATACATCCTGGGCCTAATGTAGGAACACCAGAGAGTGATGATGCCAATGGAGGAGGGAGTGACACAGAAGATGCCTGTGTTGTGGAAGCCGGCTCAGTTATCTGCAGCAATAAATCAGGCTCTAAGATGGAAGAGGACTCACTGTTGTCTGTTTTGAACATAAACCCCGACGAGTCTGACTTTTCAGGGATGAAGAATCTGCAGACTGACCTTAACAGGTCATATGAGAACAATGGAATTGGACGAGTGGATCATAAAGATGATGAGACTGTTACTAATTTGGTTTCTGATAAATGTCATCAGCTGGAAAAAACTGAGCAAGTTTTTGGAGACAGCAATTCATTGAATGGCATTGACAGCAAGTCTCTAACATTGCACGTAGAGAAAAATGGGCCTTGTACAAAAATGGAAATGGATCATGAATCTGTGTCTGCTGTAGAGGCAACTGACCCCTCTGACAGATCAAATGCTGTATCGCAGGCTGAAGATTTGACTGAAGGGAATCTGTTACCTGAAACTAGTTTGAATGTGAGAAGAGAAGAAAATAATGATGCAGATACAAGTGGCCAAATGTCCTTAAAATGTACTGTGAAAGATTCAGAAGTAAAGGAAAATGCATTGCACCAGGTTCCCAATTCAACTTCTTGTCCAAGATTCATTTTTAACTCTGGATGCCAAGATCAAGTTTCTGTGGAGTTGGATAACCAGAAGCCTGGAGTCATCTCATTGCTGCAGGAGAGTTCTCTTATGGCTGAAGATTCTGTACCAAAAGATTCTTCAGTCATTCAGTATGAGAAAACCCTTGATCAAGGTATGTCTCCTTCAACTCTTGATTTGAAAGAGACAAAGGATAAGAATAAATCTATTGGTGTGGATGAATATCACCAGCATCTGTCAGGACATTCTTTATTGAACAATGCAGTCAATGCTGAATTGTCCCAGAAGGTTGGGGGCTGTCCATTGCAGACACCCCCAAAGGAAGATATGAATCGGGATCTCAGTTGCAAAAATCCTTCTAGTGCTGCTGAAAGGCTCTCTAAGTTGGACAGGGATATTCAATCCAGTCACTCTTTAGCACAAGATTGCTATCTTCAGAAATGTAATGGTTCAAAATCTCACAGTTTGGGGACTGAGCTTCCTTTCCTATCACAGAGTCTAGAACGAACAAGCAACCAAACAAGAGCCCATGGGCGTAGTTTGTCCGATACAGAGAAAACAAGCAGGAATGGTGATTTTAAACTGTTTGGTCAGATTCTCAGCCACCCCCCTTCTCTGCAGAACCCAAATTCCTGTAGCAATGAGAATGATGATAAGGGGGCCCATAATCCTAAGTTAAGCAGCAAATCAGTTAACCTGAAATTCACCGGTCATCACTGCATTGACGGAAATCTAGGTGCCTCGAAGGTAGATCGTAATAATTATTTGGGCCTTGAGAATCTTCCCATGAGTTATGGTTTTTGGGATGGGAACAGGATACAAACAGGTTTCTCATCATTACCTGATTCAACCTTACTGCTGGCAAAATATCCTGCTGCGTTTAGTAATTATCCAATGTCGTCTTCCACCAAAATAGAGCAGCAGTCCTTGCAGACAGTTGTGAAGAGTAATGAACGGAATTTGAATGGCATATCAGTTTTCCCAACGAGGGATATGAGTAGCAGCAATGGGGTGGCAGATTATCATCAGGTATTCAGGGGCCGAGATTGTACAAAATTGCAGCCATTCACAGTAGATATGAAGCAGCGGCAAGACCTGTTCTCTGAGATGCAGAGACGAAATGGTTTTGAAGCAGTATCAAGTTTGCAAGCACCTGGAAGGGGAATGGTAGGAATGAATGTAGTTGGGAGAGGGGGTATTCTGGTAGGTGGAGCATGCACCCCCAGTGTTTCAGATCCAGTGGCCGCCATCAAAATGCACTATGCTAAAACTACTGACCAGTTTGGCGGGCAGGGTGGAAGCATCATCAGAGACGACGAATCTTGGAGAGGTAATGGGGACATAGGCAGGTAG 5214 0.4348 MPPEPLPWDRKDFFKERKHERSESLGFSARWRDSHQGSREFARWGSAEVRRPPGHGKQGGWHIFPEESGHGFVPSRSSDKMVEDENSRPFTTRGDGNGKYSRNNREIRGSFSQKDWKGHPLETGNASPNMSGRSLAINDQRSVDDMLIHSDFVNGWDQLQLKDQHDKMGSVNGLGTGQRAERENSLSSIDWKPLKWTRSGSLSSRGSGFSHSSSSKSMGVDSNEARGDLQPRNVTPVQSPSGDAVACVASTAPSEETSSRKKPRLGWGEGLAKYERKKVEGPDESVNKNGIVFCTSNGESTHSLNSNLADKSPRVMGFSDCASPATPSSVACSSSPGMEEKSFSKAGNVDNDTSTLSGSPGPVSLNHLDGFSFILESLEPNQIANLGFSPIELLQSDDPSSVDSNFMRSTAMSKLLIWKGDISKSLEMTESEIDTLENELKSLKSGSGSSCPCPAASSSFPVEGKAKPCEEQGAASNLILRPAPLQIVPPGDMMTDKTLLGSDAMEDAHAEVKDEDIDSPGTATSKFVEPPCLVKTASPSDMVIQGECSGNLKITRSTNMEVELLVSGPNVEETGISTSGGDSRLLVESKTGARVSGDMGVLDDEEDKIYNLILASNKDCANRASEVFNKLLPQNQCQNDILGAANFACRQNDSLIKQKFAMRKRFLRFKEKVITLKFRVSQHVWKEDMRLLSIRKYRAKSQKKFELSLRTSHCGYQKHRSSIRSRFSSPGNLSPVPTAEMINYTSKMLSESQMKLCRNILKMPALILDKKEKTASRFISSNGLVEDPCAVENERTMINPWTAEEKEIFMDKLAIFGKEFKKIASFLDHKTTADCVEFYYKNHKSDCFEKTKKKLELRKQGKSLSATTYLVTSGKKWNREMNAASLDMLGAASVMAARAGDSMENLQTCPGKFLLGAHHDYRTPHGDNGVVERSSSYDIIRNERETVAADVLAGICGSLSSEAMSSCITSSLDPGEGYRELRQKVGSGVKRPLTPEVTQSIDEETCSDESCGEMDPADWTDEEKCIFVQAVSSYGKDFAKISRCVRTRSRDQCKVFFSKARKCLGLDLIHPGPNVGTPESDDANGGGSDTEDACVVEAGSVICSNKSGSKMEEDSLLSVLNINPDESDFSGMKNLQTDLNRSYENNGIGRVDHKDDETVTNLVSDKCHQLEKTEQVFGDSNSLNGIDSKSLTLHVEKNGPCTKMEMDHESVSAVEATDPSDRSNAVSQAEDLTEGNLLPETSLNVRREENNDADTSGQMSLKCTVKDSEVKENALHQVPNSTSCPRFIFNSGCQDQVSVELDNQKPGVISLLQESSLMAEDSVPKDSSVIQYEKTLDQGMSPSTLDLKETKDKNKSIGVDEYHQHLSGHSLLNNAVNAELSQKVGGCPLQTPPKEDMNRDLSCKNPSSAAERLSKLDRDIQSSHSLAQDCYLQKCNGSKSHSLGTELPFLSQSLERTSNQTRAHGRSLSDTEKTSRNGDFKLFGQILSHPPSLQNPNSCSNENDDKGAHNPKLSSKSVNLKFTGHHCIDGNLGASKVDRNNYLGLENLPMSYGFWDGNRIQTGFSSLPDSTLLLAKYPAAFSNYPMSSSTKIEQQSLQTVVKSNERNLNGISVFPTRDMSSSNGVADYHQVFRGRDCTKLQPFTVDMKQRQDLFSEMQRRNGFEAVSSLQAPGRGMVGMNVVGRGGILVGGACTPSVSDPVAAIKMHYAKTTDQFGGQGGSIIRDDESWRGNGDIGR* 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0586 1737 SUPERFAMILY Homeodomain-like 1017 1065 IPR009057 -
Vvi13g0586 1737 SUPERFAMILY Homeodomain-like 783 844 IPR009057 -
Vvi13g0586 1737 CDD SANT 1019 1057 IPR001005 -
Vvi13g0586 1737 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1736 - -
Vvi13g0586 1737 Pfam Myb-like DNA-binding domain 1018 1058 IPR001005 -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 197 265 - -
Vvi13g0586 1737 SMART sant 1015 1063 IPR001005 -
Vvi13g0586 1737 SMART sant 797 845 IPR001005 -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 1209 1236 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 91 107 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 327 357 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 1 132 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 1216 1236 - -
Vvi13g0586 1737 Gene3D - 777 849 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 197 221 - -
Vvi13g0586 1737 ProSiteProfiles SANT domain profile. 1018 1065 IPR017884 -
Vvi13g0586 1737 ProSiteProfiles SANT domain profile. 796 847 IPR017884 -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 1455 1515 - -
Vvi13g0586 1737 Coils Coil 419 446 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 167 186 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 1488 1504 - -
Vvi13g0586 1737 Gene3D - 977 1071 - -
Vvi13g0586 1737 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0586 Vvi-Chr13 5270008 5280471 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi13g0586 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0586 - - vvi:100240985 3434.81