Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0577 ATGGGTAAGGAGAAGGTCCACATTAACATTGTGGTCATTGGCCATGTTGATTCTGGTAAGTCAACCACAACTGGCCATCTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTCATTGAGCGGTTTGAGAAGGAGGCTGCTGAGATGAATAAGCGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGGGAGCGTGGTATCACTATTGACATTGCATTGTGGAAGTTTGAGACCACCAAATACTACTGCACAGTCATTGATGCTCCTGGACATCGTGACTTCATCAAGAATATGATTACTGGAACCTCCCAAGCTGACTGTGCTGTCCTTATCATCGACTCTACTACTGGAGGCTTTGAAGCTGGCATTTCCAAGGATGGGCAGACTCGTGAGCATGCTCTCCTTGCTTTCACCCTTGGTGTCAGGCAGATGATCTGCTGCTGCAACAAGATGGATGCTACAACCCCTAAGTACTCAAAGGCGAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGCTACAACCCCGACAAGATTCCTTTTGTTCCCATCTCTGGTTTCGAAGGAGACAACATGATAGAGAGGTCAACCAACCTTGACTGGTACAAGGGCCCCACCCTTCTTGAGGCCCTTGACATGGTTCAAGAGCCAAAGAGGCCCTCAGACAAGCCCCTCCGACTCCCACTTCAGGATGTCTACAAGATTGGTGGCATTGGCACTGTCCCAGTGGGACGGGTTGAGACTGGTATCCTCAAGCCTGGTATGGTTGTGACTTTTGGTCCCACTGGACTGACCACTGAAGTAAAGTCAGTGGAGATGCACCATGAGTCTCTCGTGGAGGCTCTCCCCGGTGACAATGTTGGGTTCAATGTGAAGAATGTGGCTGTCAAGGATCTCAAGCGTGGCTTTGTTGCATCAAACTCCAAGGATGATCCTGCCAAGGAGGCAGCAAACTTCATATCCCAGGTTATTATCATGAACCACCCTGGCCAGATTGGCAATGGCTATGCCCCTGTTCTGGATTGCCACACATCCCATATTGCTGTCAAGTTTGCTGAGATCATGACCAAGATTGACAGACGGTCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCAGGTTTGGTTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACCTTCTCTGAGTATCCCCCTCTAGGGCGATTCGCTGTGAGGGACATGCGTCAGACAGTGGCTGTAGGAGTCATCAAAAACGTGGAAAAGAAGGATCCTTCGGGAGCCAAGGTCACAAAGTCTGCTGCCAAGAAGAAGTGA 1344 0.4918 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDMVQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLVEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFISQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIMTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSGAKVTKSAAKKK* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0577 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Vvi13g0577 447 Gene3D Translation factors 229 316 - -
Vvi13g0577 447 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Vvi13g0577 447 Gene3D Translation factors 323 430 - -
Vvi13g0577 447 FunFam Elongation factor 1-alpha 229 316 - -
Vvi13g0577 447 CDD EF1_alpha_II 230 320 - -
Vvi13g0577 447 FunFam Elongation factor 1-alpha 323 430 - -
Vvi13g0577 447 Gene3D - 1 226 IPR027417 -
Vvi13g0577 447 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Vvi13g0577 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 227 IPR000795 GO:0003924|GO:0005525
Vvi13g0577 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Vvi13g0577 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Vvi13g0577 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Vvi13g0577 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Vvi13g0577 447 CDD EF1_alpha 9 227 - -
Vvi13g0577 447 CDD EF1_alpha_III 323 426 - -
Vvi13g0577 447 FunFam Elongation factor 1-alpha 1 226 - -
Vvi13g0577 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Vvi13g0577 447 PANTHER TRANSLATION FACTOR 4 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0577 Vvi-Chr13 5165586 5167024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0577 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 95.227 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0577 K03231 - vvi:100261589 899.427