Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0574 ATGGGGAAGAAAGGGAATTGGTTTTCTGCAGTAAAGAAAGCTCTAAGCCCTGAACCCAAGGAGAAGAAAGATAAGACAACCCCTAAATCGAAGAAAAAATGGTTTGGGAAACACAAGAACCTGGATCCGGTTTCTTCATCCACAGAAAATGCAATGCCTCTACCTGCCCCTGCACCTCCTATAGAGGATGTGAAATTAACAGAAGCTGAGAATGAACAGAGCAAGCATGCTTACTCGGTGGCGCTTGCCACTGCTGTGGCTGCAGAGGCAGCTGTTGCAGCAGCACATGCTGCTGCAGAGGTTGTTCGACTCACGACCGTGACCCGTTTCTCAGGCAAATCAAAAGAGGAAGTAGCGGCTATCAAAATTCAAACAGCTTTTCGTGGTTACTTGGCAAGGAGGGCTTTGCGGGCTCTGAGGGGCTTAGTGAGGTTGAAATCATTGATCCAAGGACAATCTGTTAAACGCCAAGCAACAACCACCTTACGGTGCATGCAGACTCTTGCTCGTGTGCAGTCTCAGATTCGTGCAAGGAGGATTAGAATGTCAGAGGAGAACTTGGCTCTCCAGCGGCAACTCCAATTGAAGCGCGACAAAGAGCTTGAGAAACTGAGAGCTTCTATGGGAGATGATTGGGATGATAGTGTACAATCTAAGGAGCAAATTGAAGCAAACTTACAGAGCAAGCAAGAGGCTGCAGTGAGAAGAGAAAGGGCATTAGCTTATGCATTTTCGCATCAGCAAACGTGGAAGAACTCTTCAAAACCTGCAAACCCAACATTTATGGATCCAAACAATCCTCACTGGGGGTGGAGTTGGTTAGAGCGATGGATGGCAGCCCGGCCATGGGAGAGCCGCAGTGCAATGGAAAAGGAACTTAACACTGATCATGCCTCATTGAAAAGCACAACAAGCCGTGCCTTCTCTATTGGAGAAATCAGCAAAGCTTATGCACGTCGGGACCTCAACCTTGATAAGAAACCTTCCCCAACTGCCCAAAAACCAAGTCGTCCTCCCAGCCGGCAATCCCCTTCAACTCCTCCTTCCAAGGCACAGTCTTCATCATCAGTAACTGGGAAAACAAAGCCAGCGAGCCCAAAGGGAAGTGGTTGGGGTGCAGATGATGACTCGAGGAGCATGCTCAGCATCCAGTCTGAGCGGTACAGGAGGCATAGCATTGCAGGGTCATTAGTAAGAGACGATGAGAGCCTTGCAAGCTCACCTGCAGTTCCAAGCTACATGGCATCAACGGAGTCGACAAGGGCTAGATCCCGATTGCCAAGCCCGTTGGGTCTAGAGAAGAATGGGACACCAGAAAAGGCATCAGGGAGTTCTGCAAAGAAACGTCTCTCATTCCCAGCTTCCCCAGCTGGGCCCAGAAGGCATTCTGGTCCTCCCAGGGTGGAAACTAGCTCCATCAAGGCCATTTCCCCTGCACACAGAGGCTAG 1449 0.4983 MGKKGNWFSAVKKALSPEPKEKKDKTTPKSKKKWFGKHKNLDPVSSSTENAMPLPAPAPPIEDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAHAAAEVVRLTTVTRFSGKSKEEVAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENLALQRQLQLKRDKELEKLRASMGDDWDDSVQSKEQIEANLQSKQEAAVRRERALAYAFSHQQTWKNSSKPANPTFMDPNNPHWGWSWLERWMAARPWESRSAMEKELNTDHASLKSTTSRAFSIGEISKAYARRDLNLDKKPSPTAQKPSRPPSRQSPSTPPSKAQSSSSVTGKTKPASPKGSGWGADDDSRSMLSIQSERYRRHSIAGSLVRDDESLASSPAVPSYMASTESTRARSRLPSPLGLEKNGTPEKASGSSAKKRLSFPASPAGPRRHSGPPRVETSSIKAISPAHRG* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0574 482 MobiDBLite consensus disorder prediction 346 363 - -
Vvi13g0574 482 MobiDBLite consensus disorder prediction 409 424 - -
Vvi13g0574 482 MobiDBLite consensus disorder prediction 319 377 - -
Vvi13g0574 482 PANTHER IQ-DOMAIN 5-RELATED 1 465 - -
Vvi13g0574 482 SMART iq_5 115 137 IPR000048 GO:0005515
Vvi13g0574 482 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vvi13g0574 482 Gene3D iswi atpase 113 151 - -
Vvi13g0574 482 Coils Coil 219 239 - -
Vvi13g0574 482 MobiDBLite consensus disorder prediction 401 482 - -
Vvi13g0574 482 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Vvi13g0574 482 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0574 Vvi-Chr13 5124124 5128009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0574 1 479 IQD Protein Family AT5G03040 51.639 1.66e-141 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0574 - - vvi:100256490 845.499