Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0569 ATGGAGGAATACAATTACAAAACTTCTAATACTCCTTTCTCTTCTTCTTCTTCTTCAAGGGTCTCTCCTCTTCTAAGTGGGAGTGCTGTTCAAGGTCCTTGTGGCGCCTGCAAGGTTCTTCGTCGCCGATGCACTAAGAGTTGTCTTCTTGCTCCATATTTTCCACCAACCGAACCAATGAAGTTCATTAATGCCCATAAAATCTATGGAGCTAGCAACATCGTCAAGTGCTTGCAGGAACTTCCCGAGTCCAAGAGAGCAGATGCTGTAAGCAGCATGGTTTACGAAGCAAATGCAAGAATTCGTGATCCAGTTTACGGTTGTGCTGGTGCAATTAGTCATCTTCTGAAACGGCTTAATGATGTGCAGGCAGAATTGGCAATGACACAAGCTGAGATACTTATCATGCAGAGCCAGCAGCAGCAGCAACAACAACAACAACAACAAAATGATAATGCAATTCAAGGGCTTCATACTAAAAGTGATTTCCCCGACATAGCTATACCTCTCCTTGTCATTGAGGAAACCGCCAGCAAAAAAGTTGCCATAGCTGGATTATGCTTAATTGAACTCACCGACCTTTAA 585 0.4342 MEEYNYKTSNTPFSSSSSSRVSPLLSGSAVQGPCGACKVLRRRCTKSCLLAPYFPPTEPMKFINAHKIYGASNIVKCLQELPESKRADAVSSMVYEANARIRDPVYGCAGAISHLLKRLNDVQAELAMTQAEILIMQSQQQQQQQQQQQNDNAIQGLHTKSDFPDIAIPLLVIEETASKKVAIAGLCLIELTDL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0569 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 151 - -
Vvi13g0569 194 Coils Coil 112 148 - -
Vvi13g0569 194 MobiDBLite consensus disorder prediction 1 20 - -
Vvi13g0569 194 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Vvi13g0569 194 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0569 Vvi-Chr13 5072401 5078470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0569 30 152 AS2 family AT1G07900 60.305 3.90e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0569 LOB 1.9e-38 No_clan