Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0568 ATGGAATACACTGACCACACTACCAGGCCTTTTAGAGCTTCCGCACATTTCTCCTCTTCATCGACATTATTATCATATTCTTCAGCGCTTCCTCCTTCTCTTCCAAGAACTGCTGTTCAGAGTCCATGTGCTGCCTGCAGGGTCCTTCGCCGTCGATGCACTGACAGATGCATGTTAGCTCCATATTTTCCATCCAGTGAACCCCTCAATTTCATCATCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCCGAGTCAAAGAGAGCAGATGCAGCAAGAAGCATGGTTTATGAAGCAAATATGAGAATTCGTGATCCAGTCTATGGTTGTGCTGGTGCAATTAGTCATCTTCAGAATCAAGTTAATGGTCTGAAAGCAGAATTGGCCATGACACAAGCCGAGCTACTTATCATGCAATCTCAGCAACAGCAACAAACCCACAGTGCAAGCGTCTGGGAGGACATAAATTTAAGCTCCGATTGGAAATGA 510 0.4529 MEYTDHTTRPFRASAHFSSSSTLLSYSSALPPSLPRTAVQSPCAACRVLRRRCTDRCMLAPYFPSSEPLNFIIAHRVFGASNIIKFLQELPESKRADAARSMVYEANMRIRDPVYGCAGAISHLQNQVNGLKAELAMTQAELLIMQSQQQQQTHSASVWEDINLSSDWK* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0568 169 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vvi13g0568 169 Coils Coil 121 141 - -
Vvi13g0568 169 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vvi13g0568 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0568 Vvi-Chr13 5043981 5045395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0568 39 149 AS2 family AT2G28500 72.072 7.63e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0568 LOB 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0568 - - vvi:100251310 203.371