Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0567 ATGGAGGAATACAATTACAAAACTTCTAATACTCCTTTCTCTTCTTCTTCTTCTTCAAGGGTCTCTCCTCTTCTAAGTGGGAGTGCTGTTCAAGGTCCTTGTGGCGCCTGCAAGGTTCTTCGTCGCCGATGCACTAAGAGTTGTCTTCTTGCTCCATATTTTCCACCAACCGAACCAATGAAGTTCATTAATGCCCATAAAATCTATGGAGCTAGCAACATCGTCAAGTGCTTGCAGGAACTTCCCGAGTCCAAGAGAGCAGATGCTGTAAGCAGCATGGTTTACGAAGCAAATGCAAGAATTCGTGATCCAGTTTACGGTTGTGCTGGTGCAATTAGTCATCTTCAGAAACGGCTTAATGATGTGCAAGCAGAATTGGCAATGACACAAGCTGAGATACTTATCATGCAGAGCCAGCAGCAGCAACAACAACAACAACAAAATGATAATGCAATTCAAGGGCTTCATACTAAAAGTGATTTCCCCGACATAGCTATACCTCTCCTTGTCATTGAGGAAACCGCCAGCAAAAAAGTTGCCATAGCTGGATTATGCTTAATTGACCTCACCGACCTTTAA 579 0.4335 MEEYNYKTSNTPFSSSSSSRVSPLLSGSAVQGPCGACKVLRRRCTKSCLLAPYFPPTEPMKFINAHKIYGASNIVKCLQELPESKRADAVSSMVYEANARIRDPVYGCAGAISHLQKRLNDVQAELAMTQAEILIMQSQQQQQQQQQNDNAIQGLHTKSDFPDIAIPLLVIEETASKKVAIAGLCLIDLTDL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0567 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 149 - -
Vvi13g0567 192 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Vvi13g0567 192 Coils Coil 112 132 - -
Vvi13g0567 192 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Vvi13g0567 192 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0567 Vvi-Chr13 5028969 5035406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0567 30 150 AS2 family AT1G07900 61.069 3.12e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0567 LOB 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0567 - - vvi:100259810 278.87