Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0566 ATGTTTTCGCCTCCTTCAACTGCCTTTCAAGGTCCTTGTGCTGCCTGCAGGTTCCTCAGACGTCGATGCAATGAGAGTTGTATCCTAGCTCCATATTTTCCACCAAATGAACCACTCAAATTCATCAATGCCCATAAAGTCTTTGGAGCTAGCAACATCGTCAAGGCCTTGCAGGAACTTCCCCAGCCCAAGAGAGTAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCGAGAATTCGTGATCCAGTCTATGGTTGTGCAGGTACAATTAGCCAGCTTCACAAACAGGTTAACGACCTGAAAGCAGAATTGGCCATGGCTCAGGCTGAGCTCTTTATCATGCAATGCCAGCAACAGCAACAAAATGCTAATGCAAGCTTCTTCCTGGACAGATATTTAGTCTCAGATTATTGCTAA 420 0.4571 MFSPPSTAFQGPCAACRFLRRRCNESCILAPYFPPNEPLKFINAHKVFGASNIVKALQELPQPKRVDAVSSMVYEANARIRDPVYGCAGTISQLHKQVNDLKAELAMAQAELFIMQCQQQQQNANASFFLDRYLVSDYC* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0566 139 Coils Coil 91 111 - -
Vvi13g0566 139 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Vvi13g0566 139 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 124 - -
Vvi13g0566 139 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0566 Vvi-Chr13 5001203 5002224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0566 11 119 AS2 family AT1G07900 66.972 1.60e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0566 LOB 9.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0566 - - vvi:100249585 276.174